View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7945_high_2 (Length: 320)
Name: NF7945_high_2
Description: NF7945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7945_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 5481291 - 5480998
Alignment:
| Q |
11 |
cagagagtttgtgagagagagaaacatgggtggttgggcaattgctgtgcatggtggtgctggtgttgaccctaatctccctcttcaacgtcaagaagaa |
110 |
Q |
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| T |
5481291 |
cagagagtttgtgagagagagaaacatgggtggttgggcaattgctgtgcatggtggtgctggtgttgaccctaatctccctcttcaacgtcaagaagaa |
5481192 |
T |
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| Q |
111 |
gccaaacaacttcttactcgtgttctcaatcttggcatctctgctcttcgttccaatctttctgccatcgatgttgttgaacttgtggtatgtgttgtgt |
210 |
Q |
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| T |
5481191 |
gccaaacaacttcttactcgtgttctcaatcttggcatctctgctcttcgttccaatctttctgccatcgatgttgttgaacttgtggtatgtgttgtgt |
5481092 |
T |
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| Q |
211 |
ctatctcacatgtaccataataatattgttcacacttcctcgtacccacatacacatgtttcccatcatgtcctgtcccttttccacccttatc |
304 |
Q |
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| T |
5481091 |
ctatctcacatgtaccataataatattgttcacacttcctcgtacccacatacacatgtttcccatcatgtcctgtcccttttccacccttatc |
5480998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 42165738 - 42165571
Alignment:
| Q |
36 |
atgggtggttgggcaattgctgtgcatggtggtgctggtgttgaccctaatctccctcttcaacgtcaagaagaagccaaacaacttcttactcgtgttc |
135 |
Q |
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| T |
42165738 |
atggttggttgggctattgctgtgcatggtggcgccggtgtggatcctaatctcccaccacaacgtcaggaagaagccaaacaacttcttactcattgtc |
42165639 |
T |
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| Q |
136 |
tcaatcttggcatctctgctcttcgttccaatctttctgccatcgatgttgttgaacttgtggtatgt |
203 |
Q |
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| T |
42165638 |
ttaatattggcatatttgctctccgttccaatggttctgctgtcgatgtcgttgaacttgttgtatgt |
42165571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 47170165 - 47170309
Alignment:
| Q |
23 |
gagagagagaaacatgggtggttgggcaattgctgtgcatggtggtgctggtgttgaccctaatctccctcttcaacgtcaagaagaagccaaacaactt |
122 |
Q |
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| T |
47170165 |
gagagaaaaaaacatgtctggttgggctattgctgttcatggcggtgcaggtgtggatcctaacctcccaccacaccgtcagcaagaagccaaacagctt |
47170264 |
T |
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| Q |
123 |
cttactcgtgt-tctcaatcttggcatctctgctcttcgttccaat |
167 |
Q |
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| T |
47170265 |
cttac-cgaatgtctcaatctcggtatctctgctctccgatccaat |
47170309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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