View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7945_low_2 (Length: 374)

Name: NF7945_low_2
Description: NF7945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7945_low_2
NF7945_low_2
[»] chr2 (5 HSPs)
chr2 (170-364)||(43777256-43777452)
chr2 (36-146)||(43771353-43771463)
chr2 (231-313)||(2995839-2995920)
chr2 (241-290)||(20625300-20625349)
chr2 (231-304)||(23914731-23914804)
[»] chr1 (4 HSPs)
chr1 (231-307)||(42561686-42561762)
chr1 (231-306)||(42560996-42561071)
chr1 (244-290)||(34969385-34969431)
chr1 (213-290)||(40368038-40368115)
[»] chr4 (4 HSPs)
chr4 (244-290)||(32547389-32547435)
chr4 (244-290)||(2133521-2133567)
chr4 (231-313)||(17982095-17982176)
chr4 (244-290)||(18419292-18419338)
[»] chr8 (3 HSPs)
chr8 (243-308)||(7718313-7718378)
chr8 (240-305)||(13765852-13765917)
chr8 (271-311)||(14537999-14538039)
[»] chr5 (3 HSPs)
chr5 (218-307)||(3955872-3955961)
chr5 (231-304)||(27175125-27175198)
chr5 (244-290)||(42027689-42027735)
[»] chr3 (1 HSPs)
chr3 (233-302)||(49758125-49758194)
[»] scaffold0009 (1 HSPs)
scaffold0009 (231-290)||(53670-53729)
[»] chr7 (1 HSPs)
chr7 (231-303)||(24650234-24650306)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 170 - 364
Target Start/End: Original strand, 43777256 - 43777452
Alignment:
Q  170 aagaaaacttggatctatttagctactatatgtgacgttaacg--tatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaag 267  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43777256 aagaaaacttggatctatttagctactatatgtgacgttaactcttatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaag 43777355  T
Q  268 agaataattgaaataatgaaaaatctagcccaaaatctctcattcctcatgcatattgttttgttaaagactcttatatattgttatagataatatt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43777356 agaataattgaaataatgaaaaatctagcccaaaatctctcattcctcatgtatattgttttgttaaagactcttatatattgttatagataatatt 43777452  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 43771353 - 43771463
Alignment:
Q  36 gcaatgtattatttatttggtagtatatgattcaacccattgcctttattttttagaaaggaaaaaataatgccttcaattaatagttcttagttcttac 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43771353 gcaatgtattatttatttggtagtatatgattcaacccattgcctttattttttagaaaggaaaaaataatgccttcaattaatagttcttagttcttac 43771452  T
Q  136 aatatgcaaac 146  Q
    |||||||||||    
T  43771453 aatatgcaaac 43771463  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 2995920 - 2995839
Alignment:
Q  231 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctctcattcc 313  Q
    |||||||||||||||| |||||||||  ||||| ||| |  |||||| ||||||||||||| |||  |||||| |||||||||    
T  2995920 caacaatatatcattactatagaaaattttgtttaag-gtgtaattggaataatgaaaaatgtaggtcaaaatatctcattcc 2995839  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 20625349 - 20625300
Alignment:
Q  241 tcattattatagaaaagattgttaaagagaataattgaaataatgaaaaa 290  Q
    |||||||||||||||| ||||||  |||| |||||||| |||||||||||    
T  20625349 tcattattatagaaaaaattgttttagagtataattgagataatgaaaaa 20625300  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 23914804 - 23914731
Alignment:
Q  231 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatc 304  Q
    |||||||||| |||| ||||||  ||  ||||| ||||| ||||||| |||||||||||||| || ||||||||    
T  23914804 caacaatataacattcttataggcaaatttgtttaagagtataattggaataatgaaaaatccagtccaaaatc 23914731  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 42561686 - 42561762
Alignment:
Q  231 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctct 307  Q
    |||||||||| |||| ||||||||||  ||||| ||| ||||||||| ||||||||||||   ||||||||||||||    
T  42561686 caacaatataacattgttatagaaaaatttgttgaagggaataattggaataatgaaaaagtcagcccaaaatctct 42561762  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 42560996 - 42561071
Alignment:
Q  231 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctc 306  Q
    |||||||||| |||||||||||||||  ||||| ||| | ||||||| |||||||||||||| |  ||||||||||    
T  42560996 caacaatataacattattatagaaaaatttgtttaagggtataattggaataatgaaaaatccaatccaaaatctc 42561071  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 34969385 - 34969431
Alignment:
Q  244 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 290  Q
    ||||||||||||| |||||| ||||| ||||||| ||||||||||||    
T  34969385 ttattatagaaaaaattgtttaagagtataattggaataatgaaaaa 34969431  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 40368115 - 40368038
Alignment:
Q  213 tatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaa 290  Q
    ||||||||||||  | | |||||||||| ||||| |||||||||  ||||| ||| | ||||||| ||||||||||||    
T  40368115 tatctttttcaatgacaccaacaatataacattaatatagaaaaatttgtttaagggtataattggaataatgaaaaa 40368038  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 32547389 - 32547435
Alignment:
Q  244 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 290  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  32547389 ttattatagaaaaaattgtttaagagtataattgaaataatgaaaaa 32547435  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 2133567 - 2133521
Alignment:
Q  244 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 290  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||||||    
T  2133567 ttattatagaaaaaattgtttaagagtataattgagataatgaaaaa 2133521  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 17982176 - 17982095
Alignment:
Q  231 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctctcattcc 313  Q
    |||||||||||||||| |||||||||  ||||| ||| |  |||||| ||||||||||||| |||  |||||| |||||||||    
T  17982176 caacaatatatcattactatagaaaattttgtttaag-gtgtaattggaataatgaaaaatgtaggtcaaaatatctcattcc 17982095  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 18419338 - 18419292
Alignment:
Q  244 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 290  Q
    ||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  18419338 ttattatagaaaaaattgttcaagggtataattgaaataatgaaaaa 18419292  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 7718313 - 7718378
Alignment:
Q  243 attattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctctc 308  Q
    ||||||||||||||| ||||| |||   ||||||  ||||||||||||||||| ||||||||||||    
T  7718313 attattatagaaaagtttgttcaaggatataattagaataatgaaaaatctagtccaaaatctctc 7718378  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 13765917 - 13765852
Alignment:
Q  240 atcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatct 305  Q
    ||||||||||||||||| ||||||  |||| |||||| | ||||||||||||  ||||||||||||    
T  13765917 atcattattatagaaaaaattgttttagagtataatttagataatgaaaaattcagcccaaaatct 13765852  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 14538039 - 14537999
Alignment:
Q  271 ataattgaaataatgaaaaatctagcccaaaatctctcatt 311  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  14538039 ataattgaaataataaaaaatatagcccaaaatctctcatt 14537999  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 3955872 - 3955961
Alignment:
Q  218 ttttcaactagagcaacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctct 307  Q
    |||||||| | | ||||||||||||||||||| ||||||  ||||| ||  | | ||||| |||||||||||||| | ||||||||||||    
T  3955872 ttttcaacgacatcaacaatatatcattattaaagaaaaatttgtttaaaggtacaattggaataatgaaaaatccaacccaaaatctct 3955961  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 27175198 - 27175125
Alignment:
Q  231 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatc 304  Q
    |||||||||| ||||||||||||||| |||||| ||  | ||||||| |||||  ||||||| |||||||||||    
T  27175198 caacaatataacattattatagaaaacattgtttaatggtataattggaataacaaaaaatccagcccaaaatc 27175125  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 42027689 - 42027735
Alignment:
Q  244 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 290  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||||||    
T  42027689 ttattatagaaaaaattgtttaagagtataattgagataatgaaaaa 42027735  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 49758125 - 49758194
Alignment:
Q  233 acaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaa 302  Q
    ||||||||  |||||||||||||| |||||| ||| | |||||||||||||| ||||||| | |||||||    
T  49758125 acaatataatattattatagaaaaaattgtttaagggtataattgaaataataaaaaatccaacccaaaa 49758194  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 53729 - 53670
Alignment:
Q  231 caacaatatatcattattatagaaaagattg-ttaaagagaataattgaaataatgaaaaa 290  Q
    |||||||||| |||||||||||||||  ||| |||||||  ||||||||||||||||||||    
T  53729 caacaatataacattattatagaaaaatttgtttaaaga-tataattgaaataatgaaaaa 53670  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 24650306 - 24650234
Alignment:
Q  231 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaat 303  Q
    |||||||||  |||||||| || |||| ||||| ||| |  |||||||||||||||||||| ||||| |||||    
T  24650306 caacaatattgcattattacaggaaagtttgtttaagggtttaattgaaataatgaaaaatgtagcctaaaat 24650234  T

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