View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7945_low_5 (Length: 238)
Name: NF7945_low_5
Description: NF7945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7945_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 45549523 - 45549317
Alignment:
| Q |
20 |
aacattatttacaatagtaataataat---gataataatatcgataaaacaaatactgaggccttaagatttcacaacatggatgtaactaaaaaacaac |
116 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549523 |
aacattatttacaataataataataataatgataataatatcgataaaacaaatactgaggccttaagatttcacaacatggatgtaactaaaaaacaac |
45549424 |
T |
|
| Q |
117 |
gtccacgagagaacttccaaaattaactcacatgtgacaaccatgatgcagccaacaataatgttgaaactagaaaaccctctaacaacgacaacaatgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549423 |
gtccacgagagaacttccaaaattaactcacatgtgacaaccatgatgcagccaacaataatgttgaaactagaaaaccctctaacaacgacaacaatgg |
45549324 |
T |
|
| Q |
217 |
atgattc |
223 |
Q |
| |
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||||||| |
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| T |
45549323 |
atgattc |
45549317 |
T |
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