View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7946_high_5 (Length: 290)

Name: NF7946_high_5
Description: NF7946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7946_high_5
NF7946_high_5
[»] chr4 (1 HSPs)
chr4 (1-290)||(38533108-38533396)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 38533108 - 38533396
Alignment:
Q  1 tttctcaccatcacttttatacctagctagactagatggaacattatgctattcgccttcgttgttcaccccttcctagtcctcccttgcatctttccta 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38533108 tttctcaccatcacttt-atacctagctagactagatggaacattatgctattcgccttcgttgttcaccccttcgtagtcctcccttgcatctttccta 38533206  T
Q  101 tggttccaaaagatatgaagatgcaagtgctaggggaagcaaatttcatctcaaatttaaccatgccactcttaatttccctcaattttccgcaagccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38533207 tggttccaaaagatatgaagatgcaagtgctaggggaagcaaatttcatctcaaatttaaccatgccactcttaatttccctcaattttccgcaagccac 38533306  T
Q  201 caatttgcacgttcatttgggcatgcaaattgcatgattaacaacagcttctccgtgcctaattcaaagaatattgaaggaagtgagaac 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38533307 caatttgcacgttcatttgggcatgcaaattgcatgattaacaacagcttctccgtgcctaattcaaagaatattgaaggaagtgagaac 38533396  T

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