View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7946_low_3 (Length: 423)
Name: NF7946_low_3
Description: NF7946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7946_low_3 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 110876 - 111314
Alignment:
| Q |
1 |
ccttctgtcgttttgaaactggacttacattgcgaaggatgcgtgaagaagatcaaacgcgcggttcgccatttcgacggtactacttctatcatttact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110876 |
ccttctgtcgttttgaaactggacttacattgcgaaggatgcgtgaagaagatcaaacgcgcggttcgccatttcgacggtactacttctatcatttact |
110975 |
T |
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| Q |
101 |
aagatattcagagttttttccttttcaacggaattaaaaaattgatgatgcaggtgtggaagacgttaaggcagatacgccaaataacaaattaaccgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110976 |
aagatattcagagttttttccttttcaacggaattaaaaaattgatgatgcaggtgtggaagacgttaaggcagatacgccaaataacaaattaaccgtt |
111075 |
T |
|
| Q |
201 |
attggaaaagtagatcctcacaaggttcgtgataaactggcggagaaaattaagaagaaggttgagcttgtttcctcccctcagcctaaaaaagacgacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111076 |
attggaaaagtagatcctcacaaggttcgtgataaactggcggagaaaattaagaagaaggttgagcttgtttcctcccctcagcctaaaaaagacgacc |
111175 |
T |
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| Q |
301 |
ccgctgcagccgataaaccgc---------------------aggagaagaagaaaccggacgaagacaaaaaacctgaggagataaaacccgaagaaaa |
379 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
111176 |
ccgctgcagccgataaaccgcaggagaagaagaatcacgatgaggagaagaagaaaccggacgaagacaaaaaacctgaggagaaaaaacccgaagaaaa |
111275 |
T |
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| Q |
380 |
atcctcaaaacaggttagaaatttcattatattcttcga |
418 |
Q |
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| T |
111276 |
atcctcaaaacaggttagaaatttcattatcttcttcga |
111314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 41144435 - 41143997
Alignment:
| Q |
1 |
ccttctgtcgttttgaaactggacttacattgcgaaggatgcgtgaagaagatcaaacgcgcggttcgccatttcgacggtactacttctatcatttact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41144435 |
ccttctgtcgttttgaaactggacttacattgcgaaggatgcgtgaagaagatcaaacgcgcggttcgccatttcgacggtactacttctatcatttact |
41144336 |
T |
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| Q |
101 |
aagatattcagagttttttccttttcaacggaattaaaaaattgatgatgcaggtgtggaagacgttaaggcagatacgccaaataacaaattaaccgtt |
200 |
Q |
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| T |
41144335 |
aagatattcagagttttttccttttcaacggaattaaaaaattgatgatgcaggtgtggaagacgttaaggcagatacgccaaataacaaattaaccgtt |
41144236 |
T |
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| Q |
201 |
attggaaaagtagatcctcacaaggttcgtgataaactggcggagaaaattaagaagaaggttgagcttgtttcctcccctcagcctaaaaaagacgacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41144235 |
attggaaaagtagatcctcacaaggttcgtgataaactggcggagaaaattaagaagaaggttgagcttgtttcctcccctcagcctaaaaaagacgacc |
41144136 |
T |
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| Q |
301 |
ccgctgcagccgataaaccgcaggagaaga---------------------agaaaccggacgaagacaaaaaacctgaggagataaaacccgaagaaaa |
379 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41144135 |
ccgctgcagccgataaaccgcaggagaagaagaatcacgatgaggagaagaagaaaccggacgaagacaaaaaacctgaggagaaaaaacccgaagaaaa |
41144036 |
T |
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| Q |
380 |
atcctcaaaacaggttagaaatttcattatattcttcga |
418 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
41144035 |
atcctcaaaacaggttagaaatttcattatcttcttcga |
41143997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 1654550 - 1654598
Alignment:
| Q |
370 |
ccgaagaaaaatcctcaaaacaggttagaaatttcattatattcttcga |
418 |
Q |
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| T |
1654550 |
ccgaagaaaaatcctccaaacaagttagaaatttcagtaccttcttcga |
1654598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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