View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7946_low_4 (Length: 341)

Name: NF7946_low_4
Description: NF7946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7946_low_4
NF7946_low_4
[»] chr1 (2 HSPs)
chr1 (28-323)||(47480765-47481039)
chr1 (215-288)||(33527193-33527271)
[»] chr6 (3 HSPs)
chr6 (215-282)||(1402942-1403014)
chr6 (215-282)||(29274281-29274353)
chr6 (215-279)||(32917172-32917233)
[»] scaffold0528 (1 HSPs)
scaffold0528 (222-281)||(1025-1084)
[»] chr8 (3 HSPs)
chr8 (215-246)||(43718023-43718054)
chr8 (215-247)||(29168144-29168176)
chr8 (215-283)||(33697008-33697076)
[»] chr7 (3 HSPs)
chr7 (215-254)||(4970873-4970912)
chr7 (215-282)||(5006561-5006633)
chr7 (215-275)||(35007550-35007610)
[»] chr5 (5 HSPs)
chr5 (222-281)||(31038252-31038311)
chr5 (222-281)||(31047476-31047535)
chr5 (215-282)||(7674594-7674666)
chr5 (215-255)||(26516244-26516284)
chr5 (219-287)||(41016135-41016202)
[»] chr3 (1 HSPs)
chr3 (215-282)||(38462227-38462299)
[»] chr2 (1 HSPs)
chr2 (231-282)||(15780041-15780095)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 323
Target Start/End: Original strand, 47480765 - 47481039
Alignment:
Q  28 aatatcgatttccagattactttaaatcactttctaaatcataattgcacaaacaagcctataaacaaaaaatgtacacctcataagacctctttagata 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  47480765 aatatcgatttccagattactttaaatcactttctaaatcataattgcacaaacaaggctataaaccaaaaatgtacacctcataagacctctttagata 47480864  T
Q  128 aacagtttaattaactgccaatcgcataaacaattattatatacgcaagtgtttggccctgctaggataaacaacttatctgtaagctaagctatttcta 227  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||||    
T  47480865 aacagtttaattaactgccgatcgcataaacaattattatatacgcaagtgtttggc---------------------tctgtaagctaagctatttcta 47480943  T
Q  228 tcgcaaaagataaaataaaactgttttcttataatctataaattgttttcataagtcatcccaaatagttccatgaaacttattacaccacataag 323  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47480944 tcgcaaaagataaaataaaattgttttcttataacctataaattgttttcataagtcatcccaaatagttccatgaaacttattacaccgcataag 47481039  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 33527271 - 33527193
Alignment:
Q  215 taagctatttctatcgcaaaagataaaata-----aaactgttttcttataatctataaattgttttcataagtcatcc 288  Q
    |||||||||||||   ||||||||||||||     ||||||||||| ||||||||||||  ||||||||||||| ||||    
T  33527271 taagctatttctaaaacaaaagataaaatacagtcaaactgttttcatataatctataagctgttttcataagttatcc 33527193  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 1402942 - 1403014
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaa-----actgttttcttataatctataaattgttttcataag 282  Q
    ||||||||||||||  ||||||||||||||||     ||| ||||| ||||| ||||||||||||||||||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataag 1403014  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 29274353 - 29274281
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaa-----actgttttcttataatctataaattgttttcataag 282  Q
    |||||||||||||| |||||||||||||||||     | ||||||| ||||| ||||||| ||||||||||||    
T  29274353 taagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataag 29274281  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 32917172 - 32917233
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaaactgttttcttataatctataaattgttttcat 279  Q
    ||||||||||| || ||||||||||||||||||   ||||| ||||| |||||| ||||||||||    
T  32917172 taagctatttcaatagcaaaagataaaataaaa---ttttcatataagctataagttgttttcat 32917233  T

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Target: scaffold0528 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 1084 - 1025
Alignment:
Q  222 tttctatcgcaaaagataaaataaaactgttttcttataatctataaattgttttcataa 281  Q
    ||||||| |||||||||||||||||| ||||||| ||||  |||||| |||||| |||||    
T  1084 tttctatggcaaaagataaaataaaattgttttcgtatatgctataagttgtttccataa 1025  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 43718054 - 43718023
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaa 246  Q
    ||||||||||||||||||||||||||||||||    
T  43718054 taagctatttctatcgcaaaagataaaataaa 43718023  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 29168176 - 29168144
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaaa 247  Q
    |||||||||||||| ||||||||||||||||||    
T  29168176 taagctatttctatagcaaaagataaaataaaa 29168144  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 33697076 - 33697008
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaaactgttttcttataatctataaattgttttcataagt 283  Q
    ||||||||||||||  ||||||||||| | ||| |||| |  ||||||||||||| |||||| ||||||    
T  33697076 taagctatttctataacaaaagataaagtcaaattgttctgatataatctataaactgtttttataagt 33697008  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 4970912 - 4970873
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaaactgtttt 254  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  4970912 taagctatttctatagcaaaagataaaataaaattgtttt 4970873  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 5006633 - 5006561
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaa-----actgttttcttataatctataaattgttttcataag 282  Q
    ||||||||| ||||  ||||||||||||||||     ||||||||| |||||  |||||||||||||||||||    
T  5006633 taagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataag 5006561  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 35007550 - 35007610
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaaactgttttcttataatctataaattgttt 275  Q
    ||||||||||||||  | ||||||||||||||| ||||||| | ||| ||||||| |||||    
T  35007550 taagctatttctataactaaagataaaataaaattgttttcatgtaagctataaactgttt 35007610  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 31038252 - 31038311
Alignment:
Q  222 tttctatcgcaaaagataaaataaaactgttttcttataatctataaattgttttcataa 281  Q
    ||||||| |||||||||||||||||| ||||||| ||||  |||||| |||||| |||||    
T  31038252 tttctatggcaaaagataaaataaaattgttttcgtatatgctataagttgtttccataa 31038311  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 31047476 - 31047535
Alignment:
Q  222 tttctatcgcaaaagataaaataaaactgttttcttataatctataaattgttttcataa 281  Q
    ||||||| |||||||||||||||||| ||||||| ||||  |||||| |||||| |||||    
T  31047476 tttctatggcaaaagataaaataaaattgttttcgtatatgctataagttgtttccataa 31047535  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 7674594 - 7674666
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaa-----actgttttcttataatctataaattgttttcataag 282  Q
    ||||||||||||||  ||||||||||||||||     | ||||||||||||| | ||||| ||||||||||||    
T  7674594 taagctatttctataccaaaagataaaataaatttaaattgttttcttataagccataaaatgttttcataag 7674666  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 26516244 - 26516284
Alignment:
Q  215 taagctatttctatcgcaaaagataaaataaaactgttttc 255  Q
    |||||||||||||   |||||||||||||||||||||||||    
T  26516244 taagctatttctaaaacaaaagataaaataaaactgttttc 26516284  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 41016135 - 41016202
Alignment:
Q  219 ctatttctatcgcaaaagataaaataaaactgttttcttataatctataaattgttttcataagtcatc 287  Q
    |||||||||| |||||| ||||| | ||||||||||| ||||| |||||| ||||||||| ||| ||||    
T  41016135 ctatttctatagcaaaa-ataaattcaaactgttttcatataagctataagttgttttcacaagccatc 41016202  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 38462227 - 38462299
Alignment:
Q  215 taagctatttctatcgcaaaagataaaata-----aaactgttttcttataatctataaattgttttcataag 282  Q
    ||||||||||||||  ||||||||||||||     ||||||||||| ||||  ||||||| ||||||||||||    
T  38462227 taagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataag 38462299  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 15780041 - 15780095
Alignment:
Q  231 caaaagataaaataaa---actgttttcttataatctataaattgttttcataag 282  Q
    ||||||||||||||||   || |||||| |||||||||||| |||||||||||||    
T  15780041 caaaagataaaataaataaacggttttcatataatctataagttgttttcataag 15780095  T

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