View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_high_10 (Length: 507)
Name: NF7947_high_10
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 23 - 490
Target Start/End: Complemental strand, 40255783 - 40255303
Alignment:
| Q |
23 |
tttcatgcttaagatttttgagtaataagagcttttcagggaaaacctttatcagcatgacttaattactaatatcttttcactcaaggaaaattcc--- |
119 |
Q |
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| T |
40255783 |
tttcatgcttaagatttttgagtaataagagcttttcagggaaaacctttatcagcatgacttaattactaatatcttttcactcaaggaaaattccaac |
40255684 |
T |
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| Q |
120 |
----------caaagtccactttgaatatatgctgagatatgaagagtaacatctagcttcaaatcatcataaataatgaaaaactgcatacgtgactac |
209 |
Q |
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| T |
40255683 |
tgcatggttccaaagtccactttgaatatatgctgagatatgaagagtaacatctagcttcaaatcatcataaataatgaaaaactgcatacgtgactac |
40255584 |
T |
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| Q |
210 |
aaaaagtatgccaagtttaccattgtttttcttcttcagtattcaattcaaatatttgatggataaaaaagaacaaaataataagggaatagatacacaa |
309 |
Q |
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| T |
40255583 |
aaaaagtatgccaagtttaccattgtttttcttcttcagtattcaattcaaatatttgatggataaaaaagaacaaaataataagggaatagatacacaa |
40255484 |
T |
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| Q |
310 |
tataaaaaggcaatgcaattgcaacctagagatgctaaatctacacataaagttggctatatatcttcatctcacatttaattcaaatnnnnnnnncttt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40255483 |
tataaaaaggcaatgcaattgcaacctagagatgctaaatctacacataaagttggctatatatcttcatctcacatttaattcaaataaaaaaaacttt |
40255384 |
T |
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| Q |
410 |
gagcagccttataaaaactttctcttttttcctgctattgtatgatttttgatcccatttgattccatatacgacattggt |
490 |
Q |
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| T |
40255383 |
gagcagccttataaaaactttctcttttttcctgctattgtatgattttggatcccatttgattccatatacgacattggt |
40255303 |
T |
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