View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_high_14 (Length: 468)
Name: NF7947_high_14
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 49679146 - 49679580
Alignment:
| Q |
19 |
agttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagct |
118 |
Q |
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|||||| |||| | ||||||||||| ||||||| ||| |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49679146 |
agttaaccaaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcaccaagct |
49679245 |
T |
|
| Q |
119 |
tttggagaaaaatgcttgtgagacattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnn-atgaaaaactacataacagc |
217 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49679246 |
tttggagaagaatgcttgtgaggcattcagccatgttaatattacactccttccttcctctccttttggaacttttttttatgaaaaactacataacagc |
49679345 |
T |
|
| Q |
218 |
tttcaaatgcaaccatacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatgatttttactttggcgattca |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679346 |
tttcaaatgcaaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatgatttttactttggcgattca |
49679445 |
T |
|
| Q |
318 |
atatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggcaatccatttccat |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679446 |
atatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggcaatccatttccat |
49679545 |
T |
|
| Q |
418 |
tcttagctgatcaaataacctttcagttcaaacct |
452 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |
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| T |
49679546 |
tcttagatgatcaaataacctttcagttcaaacct |
49679580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 49690781 - 49691208
Alignment:
| Q |
19 |
agttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagct |
118 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49690781 |
agttaaccaaaagaggaaaactcttccaagttaaaaagattgataatcactggtccattggcaacactatttccattattgaccccaatatcaccaagct |
49690880 |
T |
|
| Q |
119 |
tttggagaaaaatgcttgtgagacattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnatgaaaaactacataacagct |
218 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||||||||| |
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| T |
49690881 |
tttggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccactccttttggaactttttttatgaaaaactacataacagct |
49690980 |
T |
|
| Q |
219 |
ttcaaatgcaaccatacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatgatttttactttggcgattcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690981 |
ttcaaatgcaaccatacccgaaaattaggcattcaccctccaagtaatttcttcataaatagttcttgtcatccctatgatttttactttggcgattcaa |
49691080 |
T |
|
| Q |
319 |
tatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggcaatccatttccatt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
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| T |
49691081 |
tatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggtaacccatttccctt |
49691180 |
T |
|
| Q |
419 |
cttagctgatcaaataacctttcagttc |
446 |
Q |
| |
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||| || || |||| |||||||||||| |
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|
| T |
49691181 |
tttaactaatgaaattacctttcagttc |
49691208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 80 - 449
Target Start/End: Original strand, 49686576 - 49686945
Alignment:
| Q |
80 |
caaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgagacattcagccatgttaatattacactccctccttcctct |
179 |
Q |
| |
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|||| ||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||| | || ||| ||| |||| || ||||||||| ||||| |
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| T |
49686576 |
caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctct |
49686672 |
T |
|
| Q |
180 |
ccttttggaacnnnnnnnatgaaaaactacataacagctttcaaatgcaaccatacccgaaaattaggcatccaacctccaagtaatttcttcagaaata |
279 |
Q |
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||||||||||| |||||| || ||||||||||||||||||||| |||||||| |||||||| || | | || |||| ||||||||||| ||||| |
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| T |
49686673 |
ccttttggaactttttatatgaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaata |
49686772 |
T |
|
| Q |
280 |
gttcttgtcatccctatgatttttactttggcgatt---caatatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgt |
376 |
Q |
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|| | |||| || ||||||||||||||| || |||| |||||| | |||||||| |||||||||||||| |||||||| | || ||||||||||| |
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| T |
49686773 |
gtacatgtcctcgctatgatttttacttcggtgattcaacaatatctaatgatgagcccaaccactctttcacgtcctgttttccgtttcatcttcctgt |
49686872 |
T |
|
| Q |
377 |
caatgaattaggctttgcactttccggcaatccatttccattcttagctgatcaaataacctttcagttcaaa |
449 |
Q |
| |
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|| | ||||||| ||||||||||| || || ||||||| ||| ||||||||| |||| |||||| | |||||| |
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| T |
49686873 |
cattaaattaggttttgcactttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaa |
49686945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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