View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7947_high_15 (Length: 459)

Name: NF7947_high_15
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7947_high_15
NF7947_high_15
[»] chr1 (1 HSPs)
chr1 (100-443)||(14121845-14122188)
[»] chr4 (2 HSPs)
chr4 (100-443)||(20008181-20008525)
chr4 (229-443)||(49622064-49622283)
[»] chr3 (3 HSPs)
chr3 (101-443)||(53325656-53326002)
chr3 (33-101)||(37321657-37321725)
chr3 (106-168)||(5481928-5481988)
[»] chr7 (2 HSPs)
chr7 (124-403)||(15636359-15636642)
chr7 (229-443)||(35048309-35048528)
[»] chr2 (2 HSPs)
chr2 (348-443)||(35056195-35056295)
chr2 (254-314)||(35056389-35056449)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 100 - 443
Target Start/End: Original strand, 14121845 - 14122188
Alignment:
Q  100 aagagcattgctatttcacacgacatttaaaatgcacgacaatacacgactcacgtgctcagtggaaaagtcacgcacactctcttatttcattttttat 199  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14121845 aagagcattgctatttcacacgacatttaaaacgcacgacaatacacgactcacgtgctcagtggaaaagtcacgcacactctcttattttattttttat 14121944  T
Q  200 tcttatttattttgcataaaatnnnnnnngcaactgaaatcactctgacgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcacca 299  Q
    | |||||||||||| |||||||       ||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14121945 tattatttattttgtataaaataaaaaaagcaactgaaatcactcccatgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcacca 14122044  T
Q  300 ccaagtctacaagcctttgtcgtttcgtcgccgttgttgtctggtctaccatcgccgctattgcattcactgccacggttctcgccacacaacgataact 399  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||| |||||||| |||||||||||||    
T  14122045 ccaagtctacaagcctttgtcgtttcgtcgccgttgttgtctgctctaccatcgccgatgttgcattcaccgccacgattctcgccgcacaacgataact 14122144  T
Q  400 gcatcgctgcatctccctcctcaaacatcaccttactttgattc 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14122145 gcatcgctgcatctccctcctcaaacatcaccttactttgattc 14122188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 100 - 443
Target Start/End: Complemental strand, 20008525 - 20008181
Alignment:
Q  100 aagagcattgctatttcacacgacatttaaaatgcacgacaatacacgactcacgtgctcagtggaaaagtcacgcacactctcttatttcattttttat 199  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20008525 aagagcattgctatttcacacgacatttaaaacgcacgacaatacacgactcacgtgctcagtggaaaagtcacgcacactctcttattttattttttat 20008426  T
Q  200 tcttatttattttgcataaaatnnnnnnngcaactgaaa-tcactctgacgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcacc 298  Q
    |||||||||||||| |||||||       |||||||||| ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20008425 tcttatttattttgtataaaataaaaaaagcaactgaaaatcactcccatgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcacc 20008326  T
Q  299 accaagtctacaagcctttgtcgtttcgtcgccgttgttgtctggtctaccatcgccgctattgcattcactgccacggttctcgccacacaacgataac 398  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||| |||||||| ||||||||||||    
T  20008325 accaagtctacaagcctttgtcgtttcgtcgccgttgttgtctgctctaccatcgccgatgttgcattcaccgccacgattctcgccgcacaacgataac 20008226  T
Q  399 tgcatcgctgcatctccctcctcaaacatcaccttactttgattc 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20008225 tgcatcgctgcatctccctcctcaaacatcaccttactttgattc 20008181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 229 - 443
Target Start/End: Original strand, 49622064 - 49622283
Alignment:
Q  229 gcaactgaaatcactctgacgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcaccaccaagtctacaagcctttgtcgtttcgtc 328  Q
    |||||| |||||||||  |||||| |||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||  ||||||||||||||||    
T  49622064 gcaactcaaatcactcccacgtttacagcgccaaatgcaatttcaccgccactaattgattgatctcaccaccaattctacagacctttgtcgtttcgtc 49622163  T
Q  329 gccgttgttgtctggtctaccatcgccgctattgcattcactgccacggttctcgccacacaacgataactgca-----tcgctgcatctccctcctcaa 423  Q
    |||||||||||||| ||||||||||||||| ||| |||||| ||||||||||||||| |||||| |||||| ||     ||||||||||||| |||||||    
T  49622164 gccgttgttgtctgctctaccatcgccgcttttgtattcaccgccacggttctcgccgcacaactataactacatatcgtcgctgcatctccatcctcaa 49622263  T
Q  424 acatcaccttactttgattc 443  Q
    ||||||| ||||||||||||    
T  49622264 acatcactttactttgattc 49622283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 101 - 443
Target Start/End: Complemental strand, 53326002 - 53325656
Alignment:
Q  101 agagcattgctatttcacacgacatttaaaatgcacgacaatacacgactcacgtgctcagtgga-aaagtcacgcacactctcttatttcattttttat 199  Q
    |||| |||| ||||||||||||||||| ||| |||||||||| ||||||||||||||| |||| | |||||||||||||||||  ||||| | ||| |||    
T  53326002 agagtattgttatttcacacgacatttcaaacgcacgacaatgcacgactcacgtgcttagtgtacaaagtcacgcacactct--tattttactttatat 53325905  T
Q  200 tcttatttattttgcataaaatnnnnnnngcaactgaaatcactctgacgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcacca 299  Q
    ||| ||| |||||| |||||||       ||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  53325904 tctcattgattttgtataaaataaaaaaagcaactgaaatcactcccacgtttacagcgccaaatgcaatttaaccgccactaattggttgatctcacca 53325805  T
Q  300 ccaagtctacaagcctttgtcgtttcgtcgccgttgttgtctggtctaccatcgccgctattgcattcactgccacggttctcgccacacaacgataact 399  Q
    |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||||  ||||||||||||||||||||| ||||||    
T  53325804 ccaattctacaagcctttgtcgtttcgtcgccattgttgtctgctctaccatcgccgctgttgtattcacctccacggttctcgccacacaactataact 53325705  T
Q  400 gca-----tcgctgcatctccctcctcaaacatcaccttactttgattc 443  Q
    |||     ||||||||||||| |||||||||||||| ||||| ||||||    
T  53325704 gcatatcgtcgctgcatctccatcctcaaacatcactttactctgattc 53325656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 37321657 - 37321725
Alignment:
Q  33 ttaaggaaaatgttaacgagtattttaaggacgctcttcaagagtttaaagcagtaagtttttatgaaa 101  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  37321657 ttaaggaaaatgttaacgggtatcttaaggacactcttcaagagtttaaagcagtaagtttttatgaaa 37321725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 5481988 - 5481928
Alignment:
Q  106 attgctatttcacacgacatttaaaatgcacgacaatacacgactcacgtgctcagtggaaaa 168  Q
    ||||||||||||||| |||||| ||  |||||||||||||||||||||||||| |||| ||||    
T  5481988 attgctatttcacac-acatttcaac-gcacgacaatacacgactcacgtgcttagtgtaaaa 5481928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 124 - 403
Target Start/End: Complemental strand, 15636642 - 15636359
Alignment:
Q  124 atttaaaatgcacgacaatacacgactcacgtgctcagtggaaaa--gtcacgcacactctcttat--ttcattttttattcttatttattttgcataaa 219  Q
    |||| ||| |||||||||| ||||||||||||||| |||| ||||  |||||||||||||||||||  || |||||||||||||||| |||||| |||||    
T  15636642 atttcaaacgcacgacaatgcacgactcacgtgcttagtgtaaaaaagtcacgcacactctcttatattttattttttattcttattgattttgtataaa 15636543  T
Q  220 atnnnnnnngcaactgaaatcactctgacgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcaccaccaagtctacaagcctttgt 319  Q
    ||       ||||||||||||||||  |||||| || |||||||| ||||||||| ||||| ||||||||||||||||||| || || ||||||||||||    
T  15636542 ataaaaaaagcaactgaaatcactcccacgtttacaccgccaaatacaatttaaccgccaccaattggttgatctcaccacaaattccacaagcctttgt 15636443  T
Q  320 cgtttcgtcgccgttgttgtctggtctaccatcgccgctattgcattcactgccacggttctcgccacacaacgataactgcat 403  Q
    | ||||||||||||||||||||  |||||||||||| || ||| |||||| ||||||||||||| | |||||| ||||||||||    
T  15636442 cttttcgtcgccgttgttgtcttctctaccatcgccactgttgtattcaccgccacggttctcgtcgcacaactataactgcat 15636359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 229 - 443
Target Start/End: Original strand, 35048309 - 35048528
Alignment:
Q  229 gcaactgaaatcactctgacgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcaccaccaagtctacaagcctttgtcgtttcgtc 328  Q
    |||||| |||||||||  || ||| |||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||  ||||| ||||||||||    
T  35048309 gcaactcaaatcactcccacatttacagcgccaaatgcaatttcaccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtc 35048408  T
Q  329 gccgttgttgtctggtctaccatcgccgctattgcattcactgccacggttctcgccacacaacgataactgca-----tcgctgcatctccctcctcaa 423  Q
    |||||||||||||| ||||||||||||||| ||| |||||| ||||||||||||||| |||||| |||||| ||     ||||||||||||| |||||||    
T  35048409 gccgttgttgtctgctctaccatcgccgcttttgtattcaccgccacggttctcgccgcacaactataactacatatcgtcgctgcatctccatcctcaa 35048508  T
Q  424 acatcaccttactttgattc 443  Q
    ||||||| ||||||||||||    
T  35048509 acatcactttactttgattc 35048528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 443
Target Start/End: Complemental strand, 35056295 - 35056195
Alignment:
Q  348 ccatcgccgctattgcattcactgccacggttctcgccacacaacgataactg-----catcgctgcatctccctcctcaaacatcaccttactttgatt 442  Q
    ||||||||||| || ||||||| ||||||||||||||| |||||| |||||||     ||||||||||  ||| |||||||||||||| |||||||||||    
T  35056295 ccatcgccgctgttacattcaccgccacggttctcgccgcacaactataactgcttatcatcgctgcaattccatcctcaaacatcactttactttgatt 35056196  T
Q  443 c 443  Q
    |    
T  35056195 c 35056195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 35056449 - 35056389
Alignment:
Q  254 cagcgccaaatgcaatttaactgccactaattggttgatctcaccaccaagtctacaagcc 314  Q
    ||||||| |||||| |||| | |||||||||||||| ||||||||||||| ||||||||||    
T  35056449 cagcgccgaatgcactttagccgccactaattggttaatctcaccaccaattctacaagcc 35056389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University