View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7947_high_17 (Length: 439)

Name: NF7947_high_17
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7947_high_17
NF7947_high_17
[»] chr8 (2 HSPs)
chr8 (1-420)||(10382247-10382659)
chr8 (1-420)||(9484403-9484813)
[»] chr4 (2 HSPs)
chr4 (1-371)||(52720876-52721218)
chr4 (368-420)||(52720807-52720859)
[»] chr3 (1 HSPs)
chr3 (53-107)||(46993711-46993765)
[»] chr1 (1 HSPs)
chr1 (325-368)||(10117336-10117379)
[»] chr5 (1 HSPs)
chr5 (1-41)||(3136060-3136101)


Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 10382659 - 10382247
Alignment:
Q  1 tctctctccttcctccccaccacagcaacatcaaacaacctttaaaaatttcataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  10382659 tctctctccttcctccccaccacagcaacatcaaacaacctttaaaaattccataagctgtaaaaattgatattatacttcttgattaaaaaatgaagag 10382560  T
Q  101 acccatctgatggtgattacatttaatttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtgtgcttttgtgtactgtgt 200  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10382559 acccatatggtggtgattacatttaatttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtgtgcttttgtgtactgtgt 10382460  T
Q  201 tggtgttttatagaagagatgtgactaatcagtgtatataaaagggttgaagggttggtatatagattgagtattagaagtgaacactagttgaaataca 300  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10382459 tggtgttttataggagagatatgactaatcactgtatataaaaggtttgaagggttggtatatagattgagtattagaagtgaacacttgttgaaataca 10382360  T
Q  301 gtactagagaatagagattctatttttgttgctatttgatactcattatagttaattttcacaagagcattaccaatttgcttctaagttggttagaaac 400  Q
    ||||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10382359 gtac-------tagatattctatttttgttgctatttgatactcattatagttaattttcacaagagcattaccaatttgcttctaagttggttagaaac 10382267  T
Q  401 acagcaggacccaaaccttt 420  Q
    ||||||||||||||||||||    
T  10382266 acagcaggacccaaaccttt 10382247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 9484403 - 9484813
Alignment:
Q  1 tctctctccttcctccccaccacagcaacatcaaacaacctttaaaaatttcataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagag 100  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9484403 tctctctccttcctccccaccacagcaacatcaaacaacatgtaaaaattctataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagag 9484502  T
Q  101 acccatctgatggtgattacatttaatttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtgtgcttttgtgtactgtgt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||| |||||||||||| |||  |||||||||||    
T  9484503 acccatctggtggtgattacatttaatttaatttgttaaactattacatgctta--tgatggtctcactcatgtccaatgtgtacttcagtgtactgtgt 9484600  T
Q  201 tggtgttttatagaagagatgtgactaatcagtgtatataaaagggttgaagggttggtatatagattgagtattagaagtgaacactagttgaaataca 300  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  9484601 tggtgttttataggagagatatgactaatcactgtatataaaaggtttgaagggttggtatataaattgagtattagaagtgaacacttgttgaaataca 9484700  T
Q  301 gtactagagaatagagattctatttttgttgctatttgatactcattatagttaattttcacaagagcattaccaatttgcttctaagttggttagaaac 400  Q
    ||||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9484701 gtac-------tagatattctatttttgttgctatttgatactcattatagttaattttcacaagagcattaccaatttgcttctaagttggttagaaac 9484793  T
Q  401 acagcaggacccaaaccttt 420  Q
    |||||||||| |||||||||    
T  9484794 acagcaggacacaaaccttt 9484813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 52721218 - 52720876
Alignment:
Q  1 tctctctccttcctccccaccacagcaacatcaaacaacctttaaaaatttcataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52721218 tctctctccttcctccccaccacagcaacatcaaacaacccgtaaaaattccataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagag 52721119  T
Q  101 acccatctgatggtgattacatttaatttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtgtgcttttgtgtactgtgt 200  Q
    ||||||                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52721118 acccat---------------------ttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtgtgcttctgtgtactgtgt 52721040  T
Q  201 tggtgttttatagaagagatgtgactaatcagtgtatataaaagggttgaagggttggtatatagattgagtattagaagtgaacactagttgaaataca 300  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  52721039 tggtgttttataggagagatatgactaatcactgtatataaaaggtttgaagggttggtgtatagattgagtattagaagtgaacacttgttgaaataca 52720940  T
Q  301 gtactagagaatagagattctatttttgttgctatttgatactcattatagttaattttcacaagagcatt 371  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52720939 gtacta-------gagattctatttttgttgctatttgatactcattatagttaattttcacatgagcatt 52720876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 52720859 - 52720807
Alignment:
Q  368 cattaccaatttgcttctaagttggttagaaacacagcaggacccaaaccttt 420  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  52720859 cattaccaatttgcttctaagttggttagaaacacagtaggacacaaaccttt 52720807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 46993711 - 46993765
Alignment:
Q  53 ataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccatc 107  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  46993711 ataagctgtaaaaattgatcttatccttcttgattaaaaaatcaagtgacccatc 46993765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 10117336 - 10117379
Alignment:
Q  325 tttgttgctatttgatactcattatagttaattttcacaagagc 368  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||    
T  10117336 tttgttgttatttgatactcattatagtgaattttcataagagc 10117379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3136060 - 3136101
Alignment:
Q  1 tctctctccttcctccccacca-cagcaacatcaaacaacct 41  Q
    |||||||||||||||||||||| || ||||||||||||||||    
T  3136060 tctctctccttcctccccaccaccaccaacatcaaacaacct 3136101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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