View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7947_high_2 (Length: 836)
Name: NF7947_high_2
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 643; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 17 - 732
Target Start/End: Complemental strand, 3359775 - 3359060
Alignment:
| Q |
17 |
gaagaaacctgaatttgaggcatgtcttgctagagaaccacttaacagtcccagatcagttattccaagtacgtctatgaatatatcaaccaagaggcag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3359775 |
gaagaaacctgaatttgaggcatgtcttgctagagaaccacttaacagtcccacatcagttattccaagtacgtctatgaatgtatcaaccaagaggcag |
3359676 |
T |
|
| Q |
117 |
cgtaaaccggaaacatggactgctgatacagtcttaaacaagccgacgaacagtaaaattacttggagggcgatgcaaccgggccaggatgaaattgatg |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3359675 |
cgtaaaccggaaacatggactgcttatacagtcttaaacgagccgacgaacagtaaaattacttggagggcgatgcaaccgggccaggatgaaattgatg |
3359576 |
T |
|
| Q |
217 |
gtaatgatgttgttctttatgacagtgaccacggatcaaccaagagacagcggacactgaaaagtcgtcctgctggtacgatcgtaattgatgataatgc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3359575 |
gtaatgatgttgttctttatgacagtgactacggatcaaccaagaggcagcggacactgaaaagtcgtcctgctggtacgatcgtaattgatgataatgc |
3359476 |
T |
|
| Q |
317 |
tattgttctttatgaaggtggcataacaaattcagatagggttccgacggataatgcaagccaatataatggcaaggagctttcgttggtggattaccat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3359475 |
tattgttctttatgaaggtggcataacaaattcagatagggttccgacggataatgcaagccaatataatggcaaggagctttcgttggtggattaccat |
3359376 |
T |
|
| Q |
417 |
agtgagagatcacaaaccctaatgaaagagacattggtcgtgttgaagtccatggcaaagaagcacaaaataaaaggttactataagcttaataaagctg |
516 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3359375 |
aatgagagatcacaaaccttaatgaaagagacattggtcgtgttgaagtccatggcaaagaagcacaaaataaaaggttactataagcttaataaagctg |
3359276 |
T |
|
| Q |
517 |
atttggttgaagaattagttaagcaattcagtagccgttgaacataccatcttccgggttgatagtggtagcttattttgtcatgttttctaggcatcan |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3359275 |
atttggttgaagaattagttaagcaattcagtagccgttgaacttaccatcttccggtttaatagtggtagctcattttgtcatgttttctaggcatcat |
3359176 |
T |
|
| Q |
617 |
nnnnnnggttaggtcgggtgcttccatggaatttgatttaggtttctaacatagttgttgaaaatgtgttggcaagctaaaatgaatcttgtgacaagat |
716 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3359175 |
ttttttggttaggtccggtgcttccatggaatttgatttaggtttctaacatagttgttgaaaatgtgttggcaagctaaaatgaatcttgtgacaagat |
3359076 |
T |
|
| Q |
717 |
tttgttcaacctattg |
732 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3359075 |
tttgttcaacctattg |
3359060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 753 - 819
Target Start/End: Complemental strand, 3359062 - 3358996
Alignment:
| Q |
753 |
ttgtatatgaaagaaggtacagattttctccctaaagagagttactgcaactttgtgtcacattgat |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3359062 |
ttgtatatgaaagaaggtacagattttctcccttaagagagttactgcaactttgtgtcacattgat |
3358996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 462 - 551
Target Start/End: Complemental strand, 22066599 - 22066510
Alignment:
| Q |
462 |
aagtccatggcaaagaagcacaaaataaaaggttactataagcttaataaagctgatttggttgaagaattagttaagcaattcagtagc |
551 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |||||||||| ||||||||| | ||| ||||||||||||||||| | ||||||||| |
|
|
| T |
22066599 |
aagtccatggcacagaagcgcaaaataaaaggctactataagcctaataaagcaggtttaattgaagaattagttaagtatttcagtagc |
22066510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 459 - 551
Target Start/End: Original strand, 22067416 - 22067508
Alignment:
| Q |
459 |
ttgaagtccatggcaaagaagcacaaaataaaaggttactataagcttaataaagctgatttggttgaagaattagttaagcaattcagtagc |
551 |
Q |
| |
|
||||||||||||||| | |||| |||||||||||| || ||||||||||||||||| | ||| |||| |||||||||||| | ||||||||| |
|
|
| T |
22067416 |
ttgaagtccatggcacaaaagctcaaaataaaaggctaatataagcttaataaagcaggtttagttgttgaattagttaagtatttcagtagc |
22067508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 353
Target Start/End: Complemental strand, 22066828 - 22066642
Alignment:
| Q |
168 |
agtaaaattacttggagggcgatgcaaccgggccaggatgaaattgatggtaatgatgttgttctttatgacagtgaccacggatcaaccaagagacagc |
267 |
Q |
| |
|
|||| |||||||||||||| | ||| ||||||||||||||||| ||||||| | || |||||||| || |||||| | | ||| |||||||| |||| |
|
|
| T |
22066828 |
agtataattacttggagggttgtacaatcgggccaggatgaaattcatggtaaagctggtgttcttt--gatagtgacaatgtatctaccaagaggcagc |
22066731 |
T |
|
| Q |
268 |
ggacactgaaaagtcgtcctgctggtacga-tcgtaa--ttgatgataatgctattgttctttatgaaggtggcataacaaattcagat |
353 |
Q |
| |
|
||||||| |||| | ||||| ||| || | |||| |||||| ||||||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
22066730 |
ggacactaaaaacctctactgctagtatgaatagtaaaattgatgctaatgctattgttgtttatgagggtgacataacaaattcagat |
22066642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 22067183 - 22067282
Alignment:
| Q |
168 |
agtaaaattacttggagggcgatgcaaccgggccaggatgaaattgatggtaatgatgttgttctttatgacagtgaccacggatcaaccaagagacagc |
267 |
Q |
| |
|
|||| ||||||||||||||| | ||| ||||||| |||||||||| |||||| | || |||||||||||||||||| | | |||||||||||| |||| |
|
|
| T |
22067183 |
agtataattacttggagggctgtacaatcgggccacgatgaaattggtggtaaagctggcgttctttatgacagtgactatgtatcaaccaagaggcagc |
22067282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University