View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_high_23 (Length: 378)
Name: NF7947_high_23
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 76 - 362
Target Start/End: Original strand, 8176564 - 8176852
Alignment:
| Q |
76 |
gaaatttcagaataataacatttactaggaaaaatatgacctcnnnnnnngtttatatttgagtccggagaaatacctgaacggttgctcgcaatccaaa |
175 |
Q |
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| T |
8176564 |
gaaatttcagaataataacatttactaggaaaa-tatgacctctttttttgtttatatttgagtccggagaaatacctgaacggttgctcgcaatccaaa |
8176662 |
T |
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| Q |
176 |
tgctttaactgcaattataatgttaggattcccagcccatttcattgatagttccataatcaattccttttcatcagtgctatacactttcattcctgcc |
275 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8176663 |
tgctttaactgcaactataatgttaggattcccagcccatttcattgatagttccataatcaattccttttcatcagtgctatacactttcattcctg-c |
8176761 |
T |
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| Q |
276 |
agccatattatataaatggatcaacacaattaacatttatcagtcaaaattatatttttact----gatagctatgtataccttgaaaagt |
362 |
Q |
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| T |
8176762 |
agccatattatataaatggatcaacacaattagcatttatcagtcaaaattatatttttactcatatatagctatgtataccttgaaaagt |
8176852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 8176466 - 8176494
Alignment:
| Q |
28 |
acttgcaaatcaacaacctgcaatcattt |
56 |
Q |
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| T |
8176466 |
acttgcaaatcaacaacctgcaatcattt |
8176494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 18846447 - 18846513
Alignment:
| Q |
216 |
ttcattgatagttccataatcaattccttttcatcagtgctatacactttcattcctgccagccatat |
283 |
Q |
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| T |
18846447 |
ttcattgatagttgcataatcaattccttttcatcagcgctatacactttgattcctg-cagccatat |
18846513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 27793204 - 27793080
Alignment:
| Q |
149 |
tacctgaacggttgctcgcaatccaaatgctttaactgcaattataatgttaggattcccagcccatttcattgatagttccataatcaattccttttca |
248 |
Q |
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|||||||||||||||| ||| |||||||| ||||| ||||| | | || ||||| ||||||||||| || || | ||||||||||| ||||| ||| |
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| T |
27793204 |
tacctgaacggttgctttcaacccaaatgccttaacagcaatggtgacattgggatttccagcccattttatagaaggctccataatcaactccttctca |
27793105 |
T |
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| Q |
249 |
tcagtgctatacactttcattcctg |
273 |
Q |
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||||| ||| ||||||||||||| |
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| T |
27793104 |
tcagtcacataaactttcattcctg |
27793080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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