View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7947_high_28 (Length: 314)
Name: NF7947_high_28
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 107 - 275
Target Start/End: Complemental strand, 25489915 - 25489746
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaa-cccatcca |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
25489915 |
gttgtatggtatgatgagtagctgtttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaatcctatcca |
25489816 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatgga |
275 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25489815 |
attcaaacaatgttcatgagcttcatgaatgaaaattgtaaacaaacacaaatggaaataaacaaatgga |
25489746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 23161501 - 23161673
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccc-atcca |
205 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23161501 |
gttgtatggtatgatgggtagctgtttactattgatttcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccctatcca |
23161600 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatggacag |
278 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23161601 |
atccaaacaatgttcatgagcttcatgaatggaaattgtaaacaaacacaaatggaaataaacaaatggacag |
23161673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 107 - 278
Target Start/End: Complemental strand, 36870663 - 36870491
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccc-atcca |
205 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
36870663 |
gttgtatagtatgatgagtagctgtttactattgatctcaaatgctccaaaaacacaatctatatctatatgcataaaacgaacacaaaaaccctatcca |
36870564 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatggacag |
278 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
36870563 |
atccaaacaatgttcatgagcttcatgaatggaaattgtaaacaaacacaaatggaaataaacaaatgaacag |
36870491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 53139493 - 53139667
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccc-atcca |
205 |
Q |
| |
|
||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53139493 |
gttgtatggaatgatgggtaactgtttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccctatcca |
53139592 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacac--aaatgaaaataaacaaatggacag |
278 |
Q |
| |
|
|| |||||| | ||||||||||| ||||||| ||||||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
53139593 |
atgcaaacaatattcatgagcttcatgaatgaaaattgtaaacaaacacatatatggaaataaacaaatggacag |
53139667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 1090885 - 1091057
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaa-cccatcca |
205 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1090885 |
gttgtatgttatgatgagtagctgtttactattgatctcaaatgttccataaacataatctatatctatatgcataaaaggaacacaaaaaccccatcca |
1090984 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatggacag |
278 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1090985 |
atccaaacaatgttcatgagcttcatgaatggaaattgtaaacaaacacaaatggaaataaacaaatggacag |
1091057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 12138888 - 12139060
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccc-atcca |
205 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
12138888 |
gttgtatggtatgatgggtagctgtttactattgatctcaaatgcttcaaaaatataatctatatctatatgcataaaaggaacacaaaaaccctatcta |
12138987 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatggacag |
278 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
12138988 |
atccaaacaatgttcatgagcttcatgaatggaaatttaaaacaaacacaaatggaaataaacaaatggacag |
12139060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 37746698 - 37746870
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccc-atcca |
205 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
37746698 |
gttgtatggtaagatgggtagctgtttactattgatctcaaatgctccaaaaacataatctatatctatttgcataaaaggaacacaaaaaccctatcaa |
37746797 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatggacag |
278 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37746798 |
atccaaacaatgttcatgagcttcatgaatggaaattgtaaacaaacacaaatggaaataaacaaatggacag |
37746870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 39863903 - 39863750
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccc-atcca |
205 |
Q |
| |
|
|||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39863903 |
gttgtatggtatgatgggtagatgtttactgttgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccctatcca |
39863804 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatg |
259 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39863803 |
atccaaacaatgttcatgagcttcatgaatggaaattgtaaacaaacacaaatg |
39863750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 31820124 - 31820216
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaacc |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31820124 |
gttgtatggtatgatgagtagctgtttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaacc |
31820216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 31820232 - 31820275
Alignment:
| Q |
230 |
atgaatggaaattgtaaacaaacacaaatgaaaataaacaaatg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31820232 |
atgaatggaaattgtaaacaaacacaaatggaaataaacaaatg |
31820275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 38977961 - 38978133
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccc-atcca |
205 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38977961 |
gttgtatggtatgatgagtagatgtttactattgatctcaaatgctccaaaaacgtaatctatatctatatgcataaaaggaacacaaaaaccctatcca |
38978060 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatggacag |
278 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
38978061 |
atccaaacaatgttcatgagcttcatgaatggaaattgtaaacaaatacaaacggaaataaacaaatggacag |
38978133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 107 - 277
Target Start/End: Original strand, 3306836 - 3307007
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaacc-catcca |
205 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3306836 |
gttgtatggtatgatgattagttgtttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccttatcca |
3306935 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatggaca |
277 |
Q |
| |
|
|| |||||| ||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3306936 |
atccaaacaatgttcatgaacttcatgaatggaaattgtaaacaaacacaaatggaaataaacaaatggaca |
3307007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 18910390 - 18910460
Alignment:
| Q |
111 |
tatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcat |
181 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
18910390 |
tatggtatgatgagtagttgtttactgttgatctcaaatgctctgaaaacataatctatatctatttgcat |
18910460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 107 - 274
Target Start/End: Complemental strand, 21125376 - 21125211
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccc-atcca |
205 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |
|
|
| T |
21125376 |
gttgtatggtataatgagtagctgtttactattgatctcaaatgctccaaaaacataatctat---tatgtgcataaaaggaacacaaaaaccctatcca |
21125280 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatgg |
274 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21125279 |
atccaaacaatgttcatgagcttcatgaatggaaattgtaaacaaacacaaatggaaataaacaaatgg |
21125211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 107 - 276
Target Start/End: Complemental strand, 26615500 - 26615330
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccc-atcca |
205 |
Q |
| |
|
||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26615500 |
gttgtatagtatgatgagtagctgtctattattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaaccctatcca |
26615401 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatgaaaataaacaaatggac |
276 |
Q |
| |
|
|| |||||| || |||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
26615400 |
atccaaacaatggtcatgagcttcatggatggaaattgtaaacaaacacaaatggaaataatcaaatggac |
26615330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 107 - 259
Target Start/End: Original strand, 2444781 - 2444934
Alignment:
| Q |
107 |
gttgtatggtatgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaacc-catcca |
205 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2444781 |
gttgtatgttatgatgagtagctgtttactattgatctcaaatgctcctaaaacataatctatatctatatgcataaaaggaacacaaaaaccgtatcca |
2444880 |
T |
|
| Q |
206 |
attcaaacattgttcatgagctttatgaatggaaattgtaaacaaacacaaatg |
259 |
Q |
| |
|
|||||||| || |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2444881 |
tttcaaacaatggtcatgagcttcatgaatggaaattgtaaacaaacacaaatg |
2444934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 37116718 - 37116861
Alignment:
| Q |
117 |
atgatgagtagctatttactattgatctcaaatgctccaaaaacataatctatatctatatgcataaaaggaacacaaaaac-ccatccaattcaaacat |
215 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| |
|
|
| T |
37116718 |
atgaggagtagctgtttactattgctctcaaatgcttcaaaaacataatctatatctatatgcataaaaggaacacaaaaactctatccaatccaaacaa |
37116817 |
T |
|
| Q |
216 |
tgttcatgagctttatgaatggaaattgtaaacaaacacaaatg |
259 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
37116818 |
tgttcatgagcttcatgaatgaaaattgtaaacaaacacaaatg |
37116861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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