View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_high_30 (Length: 280)
Name: NF7947_high_30
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 97 - 261
Target Start/End: Original strand, 37321217 - 37321381
Alignment:
| Q |
97 |
attcataattgatgtgagactaatcattcacacactcacgcttgatgacttgaacttcaacaaaatcttaatagaaatatatactcacacttgttggaca |
196 |
Q |
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| T |
37321217 |
attcataattgatgtgagactaatcattcatacactcacgcttgatgacttgaacttcaacaaaatcttaatagaaatatatactgacacttgttggaca |
37321316 |
T |
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| Q |
197 |
tcaattcaaattctatatgaaatattatctttaactatacaaagtgttctttcaaacaaatagac |
261 |
Q |
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| T |
37321317 |
tcaattcaaattctatatggaatattatctttaactatacaaagtgttctttcaaacaaatagac |
37321381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 37320645 - 37320741
Alignment:
| Q |
1 |
aatatatgtcgtgttttgt-ttaaagtcaaagattgaagtggtttgctttataacactatgtatttggggaagatttcgggatcaaacaattcgcta |
96 |
Q |
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| T |
37320645 |
aatatatgtcgtgttttgtgttaaagtcaaagattgaagtggtttgctttataacgctatgtatttggggaagatttcgggatcaaacaattcgcta |
37320741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 16756189 - 16756237
Alignment:
| Q |
23 |
aagtcaaagattgaagtggtttgctttataacactatgtatttggggaa |
71 |
Q |
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| T |
16756189 |
aagtcaaagattgaagtggtttgatttataacacaatgcatttcgggaa |
16756237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 32981476 - 32981444
Alignment:
| Q |
97 |
attcataattgatgtgagactaatcattcacac |
129 |
Q |
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| T |
32981476 |
attcataattgatgtgagactaattattcacac |
32981444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 43355244 - 43355215
Alignment:
| Q |
93 |
gctaattcataattgatgtgagactaatca |
122 |
Q |
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| T |
43355244 |
gctaattcataattgatgtgagactaatca |
43355215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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