View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7947_high_42 (Length: 216)
Name: NF7947_high_42
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 19700211 - 19700107
Alignment:
| Q |
87 |
ttgaataaagaaggttgaagaaatgagtaaagagatggagtttcagaggagaatgatcttcttcttctataaggaacaacattcaacttcataagttttt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
19700211 |
ttgaataaagaaggttgaagaaatgagtaaagagatggagtttcagaggagaatga---tcttgttctatttggaacaacattcaacttcataagttttt |
19700115 |
T |
|
| Q |
187 |
tcgccatt |
194 |
Q |
| |
|
|||||||| |
|
|
| T |
19700114 |
tcgccatt |
19700107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 20016392 - 20016496
Alignment:
| Q |
87 |
ttgaataaagaaggttgaagaaatgagtaaagagatggagtttcagaggagaatgatcttcttcttctataaggaacaacattcaacttcataagttttt |
186 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
20016392 |
ttgaataaagaaggttgaaggaatgagtaaagagatggagtttcggatgagaatga---tcttgttctatttggaacaacattcaacttcataagttttt |
20016488 |
T |
|
| Q |
187 |
tcgccatt |
194 |
Q |
| |
|
|||||||| |
|
|
| T |
20016489 |
tcgccatt |
20016496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 24464764 - 24464681
Alignment:
| Q |
108 |
aatgagtaaagagatggagtttcagaggagaatgatcttcttcttctataaggaacaacattcaacttcataagttttttcgccatt |
194 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24464764 |
aatgagtaaagagatggagtttcggaggagaatgatcttgttct---atatggaacaacattcaacttcataagttttttcgccatt |
24464681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University