View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_high_44 (Length: 206)
Name: NF7947_high_44
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 23040909 - 23040734
Alignment:
| Q |
19 |
taagtgtccaaggttccaagttggatacagtactaggatcaggtcctgaatttcctccaccagccacaacaatgatgttgttggcaacagcatggaaaga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
23040909 |
taagtgtccaaggttccaagttggatacagtactaggatcaggtcctgaatttcctccaccagacacaacaatgatgttgttggcaactgcatggaaaga |
23040810 |
T |
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| Q |
119 |
ccctatggaaatactgctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagcacatcaacacca |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23040809 |
ccctatggaaatactgctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagtacatcaacacca |
23040734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 42743570 - 42743740
Alignment:
| Q |
24 |
gtccaaggttccaagttggatacagtactaggatcaggtcctgaatttcctccaccagccacaacaatgatgttgttggcaacagcatggaaagacccta |
123 |
Q |
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||||||||||||| ||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42743570 |
gtccaaggttccaggtttgctacagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaaagacccta |
42743669 |
T |
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| Q |
124 |
tggaaatactgctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagcacatcaacacca |
194 |
Q |
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| T |
42743670 |
tggaaatactgctattgtgaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacacca |
42743740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 42752929 - 42753099
Alignment:
| Q |
24 |
gtccaaggttccaagttggatacagtactaggatcaggtcctgaatttcctccaccagccacaacaatgatgttgttggcaacagcatggaaagacccta |
123 |
Q |
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| T |
42752929 |
gtccaaggttccaggtttgctacagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaaagacccta |
42753028 |
T |
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| Q |
124 |
tggaaatactgctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagcacatcaacacca |
194 |
Q |
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| T |
42753029 |
tggaaatactgctattgtgaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacacca |
42753099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 42716951 - 42717115
Alignment:
| Q |
30 |
ggttccaagttggatacagtactaggatcaggtcctgaatttcctccaccagccacaacaatgatgttgttggcaacagcatggaaagaccctatggaaa |
129 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
42716951 |
ggttccaagttggatacagtactaggagcaggtcctgaatttcctccagcagccacaacaattatgttattggcaactgcatggaaagaccctatggaaa |
42717050 |
T |
|
| Q |
130 |
tactgctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagcacatcaacacca |
194 |
Q |
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||||||||| || ||||||||||||||||| | ||||||||||||||||||||| || |||||| |
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| T |
42717051 |
tactgctatcgtaaaattcaacaggaaaatcaccacccaaagacactgaaagcacgtcgacacca |
42717115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 42734905 - 42734770
Alignment:
| Q |
59 |
aggtcctgaatttcctccaccagccacaacaatgatgttgttggcaacagcatggaaagaccctatggaaatactgctattgtgaaattcaacaggaaaa |
158 |
Q |
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|||||||||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42734905 |
aggtcctgaattacctccagaagccacaacaattatgttgttggcaactgcatggaaagaccctatggaaatactgctatcgtgaaattcaacaggaaaa |
42734806 |
T |
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| Q |
159 |
tttctacccaaagacactgaaagcacatcaacacca |
194 |
Q |
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| | || |||||||||||||||||||||||||||| |
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| T |
42734805 |
tcaccactcaaagacactgaaagcacatcaacacca |
42734770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 42762551 - 42762661
Alignment:
| Q |
24 |
gtccaaggttccaagttggatacagtactaggatcaggtcctgaatttcctccaccagccacaacaatgatgttgttggcaacagcatggaaagacccta |
123 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||| |||| |
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| T |
42762551 |
gtccaaggttccaagttggatacagtactaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaaagatccta |
42762650 |
T |
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| Q |
124 |
tggaaatactg |
134 |
Q |
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| T |
42762651 |
tggaaatactg |
42762661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 42762692 - 42762724
Alignment:
| Q |
162 |
ctacccaaagacactgaaagcacatcaacacca |
194 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
42762692 |
ctacccaaagacaccgaaagcacatcaacacca |
42762724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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