View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_high_7 (Length: 518)
Name: NF7947_high_7
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 5 - 501
Target Start/End: Complemental strand, 41660154 - 41659663
Alignment:
| Q |
5 |
gaagaatataacataacataaacgactcatttgggggaaactaaaacccaaaacatcaatccggaaataatgttaaactgaaataatagcaggcatggtt |
104 |
Q |
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| T |
41660154 |
gaagaatataacataacataaacgtctcatttgggggaaactaaa-cccaaaacatcaatccggaaataatgttaaactgaaataatagcaggcatggtt |
41660056 |
T |
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| Q |
105 |
ttaccttcatgttttaagtttaaaactaatttttaagctttcaagaaaagaataatgtaacattaaccattctacaccaagagagatagaaatagtggta |
204 |
Q |
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| T |
41660055 |
ttaccttcatgttttaagtttaaaactaatttttaagctttcaagaaaagaataatgtaacattaaccattctacaccaagagagatagaaatagtggta |
41659956 |
T |
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| Q |
205 |
acgactaatgatgtgaaatatacgatagaaagagaaatagagagaaaatgagctagtgtttaataaatgtaagaaaattaagggtatacagctataaagg |
304 |
Q |
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| T |
41659955 |
acgactaatgatgtgaaatatacgatagaaagagaaatagagagaaaatgagctagtgtttaataaatgtaagaaaattaagggtatacagctataaagg |
41659856 |
T |
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| Q |
305 |
ttggaagaataattgggatccttgctcttttaggtgggtttttaattggtccatggacaccccacatccctgacatcgacatatctttcttcaacaagta |
404 |
Q |
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| T |
41659855 |
ttggaagaataattgggatccttgctcttttaggtgggtttttaattggtccatggacaccccacatccct-acattaacatatctttcttcaaca---a |
41659760 |
T |
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| Q |
405 |
gtattatcgagcagggccacagctacaagagtagaactaaatttatagacgaaagtggagaaaggttaccaacttttctgtattagctaatagctta |
501 |
Q |
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| T |
41659759 |
gtattatcgagcagggccacagctacaagagtagaagtaaatttatagacgaaagtggagaaaggttaccaacttttctgtattagctaatagctta |
41659663 |
T |
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