View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7947_high_9 (Length: 513)
Name: NF7947_high_9
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Original strand, 6039215 - 6039715
Alignment:
| Q |
1 |
tgaatgtgtctaccatgagcaaaccctgatttgtttctcagatgtgactcacattttggtattacagtttcaaaggcttcaactagcaacgccactttct |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6039215 |
tgaatgtgtcttccatgagaaaaccctgatctgtttctcaaatgtgactcacattttggtattacagtttcaaaggcttcaactagcaatgccactttct |
6039314 |
T |
|
| Q |
101 |
tcttccgagcaggagcaagcttgttaactacttgtcttagtgcacaatcaaccatccagtcctctgcattctttctctcatccatcatttgatgcctcaa |
200 |
Q |
| |
|
|||| | |||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6039315 |
tctttctagcaggagcaagcttgttcacagcttgccttagtgcacaatcaaccatccaatcctctgcattctttctttcatccatcatttgatgcctcaa |
6039414 |
T |
|
| Q |
201 |
atcaaccttttccttttctttttcaggtactaatggaaggaaattcggctctcttggattgaaattcttcaattcatcgtcatcttcatcattcctcttt |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6039415 |
atcaaccttttccttttctttctcaggtaccaatggaaggaaattcggctctcttggattgaaattcctcaattcatcgtcatcttcatcattcctcttt |
6039514 |
T |
|
| Q |
301 |
ctcctaatcacacctttccgattctctcttgtgtcttcgtcttcgtcaattatgcaacttgctcttttgttacctttgccttgatcctgaatatctttga |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
6039515 |
ctcctaatcacacctttccgattccctcttgtgtcttcgtcttcgtcaattatgcaacttgctcttttattacctttgcattgatcttgaatatctttga |
6039614 |
T |
|
| Q |
401 |
tgcttccttcaagcacatcaaataattgaatttcatccttctcctctctattgatgttatcatcttcgttctcttggctagtctcatcaacatattcttc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| | |||||| |
|
|
| T |
6039615 |
tgcttccttcaagcacatcaaataattgaatttcatccttctcctctatattgatgttatcatcttcgttctcttggcttgtctcgtcaacgttttcttc |
6039714 |
T |
|
| Q |
501 |
g |
501 |
Q |
| |
|
| |
|
|
| T |
6039715 |
g |
6039715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 26755908 - 26755760
Alignment:
| Q |
61 |
attacagtttcaaaggcttcaactagcaacgccactttcttcttccgagcaggagcaagcttgttaactacttgtcttagtgcacaatcaaccatccagt |
160 |
Q |
| |
|
||||| |||||||| |||||||| ||||| || || ||||| |||| || |||||||| || | || ||| ||| |||| | |||||| |||||| | |
|
|
| T |
26755908 |
attactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagcaagtttagtgacagcttttctgagtgaaaaatcaagcatccatt |
26755809 |
T |
|
| Q |
161 |
cctctgcattctttctctcatccatcatttgatgcctcaaatcaacctt |
209 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||| ||| |||||||| |
|
|
| T |
26755808 |
cctctgcattttttctatcatccatcatctgatgcttcagttcaacctt |
26755760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University