View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_1 (Length: 841)
Name: NF7947_low_1
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 49 - 393
Target Start/End: Original strand, 43603507 - 43603851
Alignment:
| Q |
49 |
tgattatcatttctctgtgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgc |
148 |
Q |
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| T |
43603507 |
tgattatcatttctctgtgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgc |
43603606 |
T |
|
| Q |
149 |
gattctggcattttacaagggacctcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacataaagatagtgaatcacat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603607 |
gattctggcattttacaagggacctcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacataaagatagtgaatcacat |
43603706 |
T |
|
| Q |
249 |
gagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtggagtttgtggattgtatttcaggtaccgtttatttaattccaagttg |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603707 |
gagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtggagtttgtggattgtatttcaggtaccgtttatttaattccaagttg |
43603806 |
T |
|
| Q |
349 |
ggatataattaagatctagaatgatgaaacatttaggtgtgacat |
393 |
Q |
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| T |
43603807 |
ggatataattaagatctagaatgatgaaacatttaggtgtgacat |
43603851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 502 - 826
Target Start/End: Original strand, 43603921 - 43604255
Alignment:
| Q |
502 |
acaggctcagttacttaaaagttacccttcaagattaaggttcatgagcattcagagcatatctagtgcaattcagtcatttgtcattgctatagctttt |
601 |
Q |
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| T |
43603921 |
acaggctcagttacttaaaagttacccttcaagattaaggttcatgagcattcagagcatatctagtgcaattcagtcatttatcattgctatagctttt |
43604020 |
T |
|
| Q |
602 |
gaaagagattttgagcagtggaagttgggctggaacatgagactgttagctgctgtttactgtgtaagtattaaattaaagtaacacactaaacatgtta |
701 |
Q |
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| T |
43604021 |
gaaagagattttgagcagtggaagttgggttggaacatgagactgttagctgctgtttactgtgtaagtattaaattaaagtaacacgctaaacatgtta |
43604120 |
T |
|
| Q |
702 |
tatttatgcacactcttttcaat-agattattgtgcatattgatgctggcaaga---------atgttttttgatgtgtatattgtcctaattcctaaat |
791 |
Q |
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| T |
43604121 |
tatttatgcacactcttttcaataagattattgtgcattttgatgctggcaagaatgttagtgatgttttttgatgtgtatattgtcctaattcctaaat |
43604220 |
T |
|
| Q |
792 |
gaaacagggggtactagtgactggagtttcatatt |
826 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43604221 |
gaaacagggggtactagtgactggagtttcatatt |
43604255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 66 - 326
Target Start/End: Original strand, 43609933 - 43610193
Alignment:
| Q |
66 |
tgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgcgattctggcattttaca |
165 |
Q |
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|||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||| ||||| ||||||||||| ||||||| |
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| T |
43609933 |
tgtagagtggagaaggtaaatataaggacaaaatctggaatttcaaagatagggagtgttttattgtgcatggccggtgtagcgattctggccttttaca |
43610032 |
T |
|
| Q |
166 |
agggacctcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggatttt |
265 |
Q |
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||||||| ||| | || ||||| || || |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
43610033 |
agggaccccaattgcgaattgcacgtcacctcccatctggatatcatcacaactatcaacaacatgaagatagtgaatcatatgacaaaaaatggatttt |
43610132 |
T |
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| Q |
266 |
gggttctttcctcttgttcctagccacagtcatgtggagtttgtggattgtatttcaggta |
326 |
Q |
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||||||||| |||||||||||| | || | | |||||||||||||||||| |||||||| |
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| T |
43610133 |
gggttctttactcttgttcctaactaccattacctggagtttgtggattgtacttcaggta |
43610193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 73 - 340
Target Start/End: Original strand, 43616565 - 43616832
Alignment:
| Q |
73 |
tggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgcgattctggcattttacaagggacc |
172 |
Q |
| |
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|||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
43616565 |
tggagaaggtaaatttaaggacaaaatctggaatttcaaagataggaagtgtattattgtgcatggccggtgtagcgattctggcattttacaagggacc |
43616664 |
T |
|
| Q |
173 |
tcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggattttgggttct |
272 |
Q |
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||| ||||||| ||||| ||||| ||||||||||||||||||||| ||||| ||||| || || ||||||| |||| |||||||||||||||||| || |
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| T |
43616665 |
ccaattacggatcgcgcgtcatcttctatctggatatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgct |
43616764 |
T |
|
| Q |
273 |
ttcctcttgttcctagccacagtcatgtggagtttgtggattgtatttcaggtaccgtttatttaatt |
340 |
Q |
| |
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|| ||||||||||||| ||| |||||||||| |||||| ||||| |||||||||| || |||||||| |
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| T |
43616765 |
ttactcttgttcctaggcaccatcatgtggagcttgtggcttgtacttcaggtaccattaatttaatt |
43616832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 502 - 687
Target Start/End: Original strand, 43610319 - 43610503
Alignment:
| Q |
502 |
acaggctcagttacttaaaagttacccttcaagattaaggttcatgagcattcagagcatatctagtgcaattcagtcatttgtcattgctatagctttt |
601 |
Q |
| |
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|||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
43610319 |
acaggctcagttgcttaaaacttacccttcaaagctaaggttcatgagcattcaaagcctatcaagtgcaattcagtcatttgtcattgctatagctttt |
43610418 |
T |
|
| Q |
602 |
gaaagagattttgagcagtggaagttgggctggaacatgagactgttagctgctgtttactgtgtaagtattaaattaaagtaaca |
687 |
Q |
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| T |
43610419 |
gaaagagatattgagcagtggaagttgggttggaacatgagactgctagccgttgtttactgtgtaagtctt-aattaaagtaaca |
43610503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 504 - 686
Target Start/End: Original strand, 43617059 - 43617240
Alignment:
| Q |
504 |
aggctcagttacttaaaagttacccttcaagattaaggttcatgagcattcagagcatatctagtgcaattcagtcatttgtcattgctatagcttttga |
603 |
Q |
| |
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|||||||||||||||| || |||||||||| ||| |||||| | |||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
43617059 |
aggctcagttacttaagagctacccttcaaagctaaagttcataaccattcagagcctatcaagtgcaattcagtcatttgtcattgccatagcttttga |
43617158 |
T |
|
| Q |
604 |
aagagattttgagcagtggaagttgggctggaacatgagactgttagctgctgtttactgtgtaagtattaaattaaagtaac |
686 |
Q |
| |
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||||||| |||||||||||||||| || ||||||||||||||| | |||| |||||||||||||||| || |||||||||||| |
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| T |
43617159 |
aagagatattgagcagtggaagttaggttggaacatgagactgctggctgttgtttactgtgtaagtgtt-aattaaagtaac |
43617240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 476
Target Start/End: Original strand, 43603852 - 43603898
Alignment:
| Q |
430 |
ttattattatatgaacacacatacaatactcacactgatcctgatcc |
476 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603852 |
ttattattatatgaacacacatacaatactcacactgatcctgatcc |
43603898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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