View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_11 (Length: 499)
Name: NF7947_low_11
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 125 - 487
Target Start/End: Complemental strand, 28817901 - 28817539
Alignment:
| Q |
125 |
gttgaaacatttagaaatacattttgtggaattatatgatcctttaagcaaatataacattcttgcaagaaactgaagtctaatcatgttacctgaattg |
224 |
Q |
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| T |
28817901 |
gttgaaacatttagaaatacattttgtggaattatatgatcctttaagcaaatataacattcttgcaagaaactgaagtctaatcatgttacctgaattg |
28817802 |
T |
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| Q |
225 |
atgttttctgctgattgtctagcatgtcatacaaacagttttaaggatgtggtgataaatgtcgttgttcaagtgacacttcttggcactactttgaaat |
324 |
Q |
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| T |
28817801 |
atgttttctgctgattgtctagcatgtcatacaaacagttttaaggatgtgctgataaatgtcattgttcaagtgacacttcttggcactactttgaaat |
28817702 |
T |
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| Q |
325 |
tcatgtcactctcaccattgtggatcagttggtttctatatatcaacaaacaataagaaaaagttgattacatacattcatgtaagatttaataatattt |
424 |
Q |
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| T |
28817701 |
tcatgtcactctcaccattgtggatcagttggtttctatatatcaacaaacaataagaaaaagttgattacatacattcatgtaagatttaataatattt |
28817602 |
T |
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| Q |
425 |
gattggtttctataatataataataactgttgtttacctcaaaaataataattgttgttgttg |
487 |
Q |
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| T |
28817601 |
gattggtttctataatataataataactgttgtttacctcaaaaataataattgttgttgttg |
28817539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 28818004 - 28817929
Alignment:
| Q |
7 |
tcgaagaatatgagttacaatgatggaatattatcttcatatctctactggtaagtccaaattatatatgatataa |
82 |
Q |
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| T |
28818004 |
tcgaagaaaatgagttacaatgatggaatattatcttcatatctctactggtaagtccaaattatatatgatataa |
28817929 |
T |
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