View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_12 (Length: 492)
Name: NF7947_low_12
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 474
Target Start/End: Complemental strand, 25121146 - 25120677
Alignment:
| Q |
7 |
atgtcgaagaatatttttgttgattcaaggacaaaagatcaccaaagggaggtacataatatgagaaggtttgaaagtaaaaaatttattgtgagaaatg |
106 |
Q |
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| T |
25121146 |
atgtcgaaaaatatttttgttgattcaaggacaaaagatcaccaaagggaggtacataatatgagaaggtttgaaagtaaaaaatttattgtgagaagtg |
25121047 |
T |
|
| Q |
107 |
gatggatgtttgtgggtgcttgcaagagagggtggtatagactcagaatgaatctcaacttttgagattaaaataggaatgatgcttggtttttgtgttg |
206 |
Q |
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| T |
25121046 |
gatggatgtttgtgggtgcttgcaagagagggtggtatagactcagaatgaacctcaacttttgagatcaaaataggaatgatgcttggtttttgtgttg |
25120947 |
T |
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| Q |
207 |
gtaatgcttgttttttgtgcagcaacaacac-ttgtagggttggcaaagttgtcaata----tccatcgtccaagaaatggaaacaagaagtgctagaat |
301 |
Q |
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| T |
25120946 |
ggaatgcttgttttttgtgcagcaacaacactttgtagggttggcaaagtcatcaatagatgtccatcatccaaaaaatggaaacaagaagtgctacatt |
25120847 |
T |
|
| Q |
302 |
tacaggacttttagcttcttacatttgtcatgataattatttcaagaagtttatttgtaattcagagatagtaatttttatatgtagcatttc-tttaag |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||| ||| | | |||||||| ||| ||||| |||||||| |||||||| | |||| |
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| T |
25120846 |
tacaggacttttagcttcttacatttgttatgataattatgtcaagaa-tttttctataattcagggat-gtaatgtttatatgcagcatttcgtgtaag |
25120749 |
T |
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| Q |
401 |
ggtttatattaatgttaaagattgttgaannnnnnnttaggatcctcttcataatggcatttgtgtacttatgt |
474 |
Q |
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| T |
25120748 |
ggtttatattaatgttaaagattgttgaagggggg--taggatcctcttcataatggcatttgtgtacttatgt |
25120677 |
T |
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