View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_13 (Length: 483)
Name: NF7947_low_13
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_13 |
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| [»] scaffold0636 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 467
Target Start/End: Complemental strand, 46035195 - 46034733
Alignment:
| Q |
10 |
tcatagattactaaaccaatataaaaataaacaacccctactcgtacccaccattgcaataaactaacatcaattgcataacttgatataacttattnnn |
109 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46035195 |
tcatagattactaaaccaatataaaaataaacaaccactactcgtacccaccattgcaataaactaacatcaattgcataagttgatataacttattaaa |
46035096 |
T |
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| Q |
110 |
nnnn-gtataaagttgttatattgaccactctagtttgannnnnnnnnnnnnnnnnctcaatgaccacaa--caaaatttataccattttacatcgagct |
206 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46035095 |
aaaaagtataaagttgttatattgaccactctagtttgaaaatatttttttttcttctcaatgaccacaaaacaaaatttataccattttacatcgagct |
46034996 |
T |
|
| Q |
207 |
aaacaaggtgacctaatctcgtaaatcaattagcttcaaaacatgtctatggtgcaaaaatgagtaataatcatttgcacgatacgtaccatcaaatccc |
306 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034995 |
aaacaaggtgacctactctcgtaaatcaattagcttcaaaacatgtctatggtgcaaaaatgagtaataatcatttgcacgatacgtaccatcaaatccc |
46034896 |
T |
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| Q |
307 |
caccgtacatgcatatatggattatatgtctaaaca--nnnnnnnnaagaacttaaattagttcacccaaattgataataaggagaagaactaagacctt |
404 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| | ||||| |
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| T |
46034895 |
caccgtacatacatatatggattatatgtctaaacattttttttttaagaacttaaactagtccacccaaattgataataaggagaagaaccgaaacctt |
46034796 |
T |
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| Q |
405 |
gcggaagaacatactctaagaccttaaaccaacatcactagatcaatctaagtaagttattat |
467 |
Q |
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| T |
46034795 |
gagaaagaatatattttaagacctcaaaccaacatcactagatcaatctaagtgagttattat |
46034733 |
T |
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Target: scaffold0636 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0636
Description:
Target: scaffold0636; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 5740 - 5830
Alignment:
| Q |
252 |
tctatggtgcaaaaatgagtaataatcatttgcacgatacgtaccatcaaatccccaccgtacatgcatatatggattatatgtctaaaca |
342 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||| |
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| T |
5740 |
tctatggtgcaaaaatgagttataatcatttgcaagatacataccatcaaatggccaccatacatgcatatatggattatatgtccaaaca |
5830 |
T |
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