View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_16 (Length: 456)
Name: NF7947_low_16
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 439
Target Start/End: Original strand, 3675106 - 3675529
Alignment:
| Q |
13 |
attattctaataaggttatccaaaacctggtccatcatgtaaacatgtcttgtcctgcaagttatgggtcgaatctaatcctaactcnnnnnnnnnnngt |
112 |
Q |
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| T |
3675106 |
attattctaataaagttatacaaaaccttggccatcatgtaaacatgtcttgtcctgcaagttatgggtcgaatctaatccaaactaaaaaaaata---t |
3675202 |
T |
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| Q |
113 |
ggtaaaagggtgtctaaggacaattagtccggtggaagaagagattgtagggtttagattgacattcaaattacccattctgactatcaagtcttgcctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
3675203 |
agtaaaagggtgtctaaggacaattagtccggtggaagaagagattgtagggtttagattgacattcaaattatccattctgactatcaagtcgtgcctc |
3675302 |
T |
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| Q |
213 |
aaggctcaaagaggtatttacatatcattttactaattaaaaaggtcatcatattagcaacactagttaaactcacaagcgg-caggttagttaatcttt |
311 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||| ||||||||||| |||||| |||||||||||||| | |||||||||||| |||| |
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| T |
3675303 |
aaggctcaaagaggtatttacatatcattt-attaattaaaaaagtcatcatattgacaacacaagttaaactcacaaacttacaggttagttaaccttt |
3675401 |
T |
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| Q |
312 |
tatgaattgagtcaattcttgatgtgtgacttgttttattatgttttatacattatgctaaagtttatccaccctgtaattgcttataggctagaatatg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3675402 |
tatgaattgagtcaattcttgatgtgtgacttgttttattatgttttatacattatgctaaagtttatccaccctgtaattgcttataggctagaatgtg |
3675501 |
T |
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| Q |
412 |
gcaattgcattgcatcttgtgttaatat |
439 |
Q |
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| T |
3675502 |
gcaattgcattgcatcttgtgttaatat |
3675529 |
T |
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