View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_18 (Length: 439)
Name: NF7947_low_18
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 210 - 420
Target Start/End: Complemental strand, 9561812 - 9561602
Alignment:
| Q |
210 |
tgattttaagaagaattgattcggacacacattagcacaagattttaagcaaacataagtaaattaggggaacaaaaaagtttctggtcatttcgttaag |
309 |
Q |
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| T |
9561812 |
tgattttaagaagaatcgattcggacacacattagcacaagattttaagcaaacataagtaaattaggggaacaaaaaagtttctggtcattttgttaag |
9561713 |
T |
|
| Q |
310 |
gatacgaatatattcataccgtaagtcgatgatcaccaccaataatcctgatactgagaacatgttcattgtcatcaaggacttctagtctttctgtact |
409 |
Q |
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| T |
9561712 |
gatacgaatatattcataccgtaagtcgatgatcaccaccaataatcctgatactgagaacatgttcattgtcatcaaggacttcgagtctttctgtact |
9561613 |
T |
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| Q |
410 |
tgtggtagcag |
420 |
Q |
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||||||||||| |
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| T |
9561612 |
tgtggtagcag |
9561602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 9561958 - 9561838
Alignment:
| Q |
13 |
tttggtgttcccgtcaggtatatccaccacaaaagattcaattactagtgttcctggccttccgtcaataatttcagggtggagagacatcaccgacgaa |
112 |
Q |
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| T |
9561958 |
tttggtgttcccgtcaggtatatccaccacaaaagattcaattactagtgttcctggccttccgtcaataatttcagggtggagagacatcaccgacgaa |
9561859 |
T |
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| Q |
113 |
tagttctgaaagatgatttat |
133 |
Q |
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| T |
9561858 |
tagttctgaaagatgatttat |
9561838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 41329865 - 41329960
Alignment:
| Q |
323 |
tcataccgtaagtcgatgatcaccaccaataatcctgatactgagaacatgttcattgtcatcaaggacttctagtctttctgtacttgtggtagc |
418 |
Q |
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| T |
41329865 |
tcataccctaagcctatgatcaccaccaataatcctgatgcttagaatatgctcattgtcatcaaggacctccaatctttcagtactagttgtagc |
41329960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 41327980 - 41328089
Alignment:
| Q |
14 |
ttggtgttcccgtcaggtatatccaccacaaaagattcaattactagtgttcctggccttccgtcaataatttcagggtggagagacatcaccgacgaat |
113 |
Q |
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| T |
41327980 |
ttggtattcccctctggtacatctaccacaaaagattcaattaccagggttcctggtcttccatcaataatttctggatggagggacatgatagatgagt |
41328079 |
T |
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| Q |
114 |
agttctgaaa |
123 |
Q |
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|||||||||| |
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| T |
41328080 |
agttctgaaa |
41328089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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