View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7947_low_21 (Length: 384)

Name: NF7947_low_21
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7947_low_21
NF7947_low_21
[»] chr1 (2 HSPs)
chr1 (1-365)||(48911961-48912327)
chr1 (1-50)||(4108641-4108690)
[»] chr5 (3 HSPs)
chr5 (1-43)||(29372232-29372274)
chr5 (1-43)||(7509683-7509725)
chr5 (66-122)||(18924479-18924535)
[»] chr8 (2 HSPs)
chr8 (65-124)||(14109669-14109728)
chr8 (65-122)||(35971967-35972024)
[»] chr2 (1 HSPs)
chr2 (65-128)||(8962212-8962275)
[»] chr3 (5 HSPs)
chr3 (1-43)||(21980651-21980693)
chr3 (1-43)||(22003082-22003124)
chr3 (66-123)||(21980566-21980623)
chr3 (66-123)||(22002997-22003054)
chr3 (1-50)||(27948425-27948474)
[»] chr7 (3 HSPs)
chr7 (65-122)||(35240593-35240650)
chr7 (64-123)||(1503284-1503343)
chr7 (65-119)||(32838202-32838256)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 48911961 - 48912327
Alignment:
Q  1 atcaatgttcttcattaatctaatggtgacaaatgtcatttttattatacnnnnnnnn--tcaccattttttaatgtctcctatagtaggagacctattc 98  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||          ||||||||||||||||||||||| ||||||||||||||||    
T  48911961 atcaatgttcttcatcaatctaatggtgacaaatgtcatttttgttatacaaaaaaaaaatcaccattttttaatgtctcctacagtaggagacctattc 48912060  T
Q  99 tcgtctcctaccggaaacggcgcctatgatacaacatttccatgtttgaaacttcttataaaatttctaaacnnnnnnnaagcatgtatctattctactt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  48912061 tcgtctcctaccggaaacggcgcctatgatacaacatttccatgtttgaaacttcttataaaatttctaaactttttttaagcatgtatctattctactt 48912160  T
Q  199 ctgaataaaatgctatatacctgcttagcagccttcatcaaagtagaagccatcaactttggttgttctgaaaaatttgcactatccattgatgtagtat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912161 ctgaataaaatgctatatacctgcttagcagccttcatcaaagtagaagccatcaactttggttgttctgaaaaatttgcactatccattgatgtagtat 48912260  T
Q  299 gtgcaggtggttcagggtaatttggtgaaagttgactagaaggagcatccctttgcaatgtcccaac 365  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48912261 gtgcaggtggttcagggtaatttggtgaaagctgactagaaggagcatccctttgcaatgtcccaac 48912327  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4108641 - 4108690
Alignment:
Q  1 atcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 50  Q
    ||||||||||||||| ||||||| |||||||| |||||||||| ||||||    
T  4108641 atcaatgttcttcatcaatctaacggtgacaagtgtcatttttgttatac 4108690  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29372232 - 29372274
Alignment:
Q  1 atcaatgttcttcattaatctaatggtgacaaatgtcattttt 43  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  29372232 atcaatgttcttcatcaatctaatggtgacaaatgtcattttt 29372274  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7509683 - 7509725
Alignment:
Q  1 atcaatgttcttcattaatctaatggtgacaaatgtcattttt 43  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  7509683 atcagtgttcttcatcaatctaatggtgacaaatgtcattttt 7509725  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 18924479 - 18924535
Alignment:
Q  66 tttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcc 122  Q
    ||||||| ||||||||  || ||||||||||||  |||||||| |||||||||||||    
T  18924479 tttttaaagtctcctaccgtgggagacctattcaagtctcctatcggaaacggcgcc 18924535  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 14109669 - 14109728
Alignment:
Q  65 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgccta 124  Q
    |||||||||||||||||  |||||||||||||||  |||||||||| |||| ||||||||    
T  14109669 ttttttaatgtctcctactgtaggagacctattcaagtctcctaccagaaatggcgccta 14109728  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 35971967 - 35972024
Alignment:
Q  65 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcc 122  Q
    |||||||||||||||||  |||||||||||||||  ||||||||||  ||||||||||    
T  35971967 ttttttaatgtctcctaccgtaggagacctattcaagtctcctaccataaacggcgcc 35972024  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 8962212 - 8962275
Alignment:
Q  65 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcctatgat 128  Q
    |||| |||||||||||| |||||||||||||||   ||||||||||||||||| ||||| ||||    
T  8962212 ttttataatgtctcctacagtaggagacctatttaagtctcctaccggaaacgacgcctgtgat 8962275  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21980693 - 21980651
Alignment:
Q  1 atcaatgttcttcattaatctaatggtgacaaatgtcattttt 43  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  21980693 atcagtgttcttcatcaatctaatggtgacaaatgtcattttt 21980651  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22003124 - 22003082
Alignment:
Q  1 atcaatgttcttcattaatctaatggtgacaaatgtcattttt 43  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  22003124 atcagtgttcttcatcaatctaatggtgacaaatgtcattttt 22003082  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 21980623 - 21980566
Alignment:
Q  66 tttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 123  Q
    ||||||||||||||||| ||||||||||||||    |||||||||| ||| |||||||    
T  21980623 tttttaatgtctcctatcgtaggagacctatttaaatctcctaccgaaaatggcgcct 21980566  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 22003054 - 22002997
Alignment:
Q  66 tttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 123  Q
    ||||||||||||||||| ||||||||||||||    |||||||||| ||| |||||||    
T  22003054 tttttaatgtctcctatcgtaggagacctatttaaatctcctaccgaaaatggcgcct 22002997  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27948474 - 27948425
Alignment:
Q  1 atcaatgttcttcattaatctaatggtgacaaatgtcatttttattatac 50  Q
    ||||||||||||| | ||| ||| |||||||| |||||||||||||||||    
T  27948474 atcaatgttcttcgtcaatataacggtgacaagtgtcatttttattatac 27948425  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 35240650 - 35240593
Alignment:
Q  65 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcc 122  Q
    ||||||||||||| |||  ||||||||| |||||  ||||||||||||||||||||||    
T  35240650 ttttttaatgtcttctaccgtaggagacatattcaagtctcctaccggaaacggcgcc 35240593  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 1503284 - 1503343
Alignment:
Q  64 attttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggcgcct 123  Q
    ||||||||||||||||||  || ||||||||||||  ||||||||||  |||||||||||    
T  1503284 attttttaatgtctcctactgtgggagacctattcaagtctcctaccataaacggcgcct 1503343  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 32838256 - 32838202
Alignment:
Q  65 ttttttaatgtctcctatagtaggagacctattctcgtctcctaccggaaacggc 119  Q
    |||| ||||||||||||  |||||||||||||||  |||||||| ||||||||||    
T  32838256 ttttataatgtctcctaccgtaggagacctattcaagtctcctaacggaaacggc 32838202  T

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