View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_22 (Length: 384)
Name: NF7947_low_22
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 6055396 - 6055037
Alignment:
| Q |
11 |
cacacacgcacctatgataattagattgttaattaagaaaataatggaacctaatttgattttatataatggttaagtgccactgccatttagcatctgc |
110 |
Q |
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| T |
6055396 |
cacacacgcacctatgataattagattgttaattaagaaaataatggaacctaatttgattttatataatggttaagtgccactgccatttagcatctgc |
6055297 |
T |
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| Q |
111 |
cactttgtctgatgattacgtcctaatataattaagctccagcgtgattattaataataatccaatcacatcaaaacaataggaaattaaacatagaaga |
210 |
Q |
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| T |
6055296 |
cactttgtctgatgattacgtcctaatataattaagctccagcgtgattattaataataatccaatcacatcaaaacaataggaaattaaacatagaaga |
6055197 |
T |
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| Q |
211 |
tatttttaaagcttttggagaattaaaagtccttaaccttggattcaagtgactnnnnnnnctagcttctccctaacataccattgtttat-nnnnnnnc |
309 |
Q |
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| T |
6055196 |
tatttttaaagcttttggagaattaaaagtccttaaccttggattcaagtgactaaaaaaactagcttctccctaatataccattgtttataaaaaaaac |
6055097 |
T |
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| Q |
310 |
ccaagcaaacattcaagtacttaatctcaaggggctaataaattttagttaagaattaat |
369 |
Q |
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| T |
6055096 |
ccaagcaaacattcaagtacttaatctcaaggggctaataaattttagttaagaattaat |
6055037 |
T |
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