View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7947_low_23 (Length: 381)
Name: NF7947_low_23
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 49690786 - 49690434
Alignment:
| Q |
1 |
ttaactggacatacttcatagcagttttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49690786 |
ttaactggacatacttcatagcagttttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtattt |
49690687 |
T |
|
| Q |
101 |
aagaaacccaagacttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatga |
200 |
Q |
| |
|
|| |||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
49690686 |
aaaaaacccaagatttccacaaccaaatgagtctggacaatcaccactgtgtccatttcctttcctagttaagacaagtagcagtaacacagtcaaatga |
49690587 |
T |
|
| Q |
201 |
gagaacaaaaggaacctaaaatgtaaaacataaactaaagccattcaactgtgtgtgttaaacaatttgttccacacttgttaatttcattgcataaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| | | |
|
|
| T |
49690586 |
gagaacaaaaggaacctaaaatgtaaaacataaactaaagccattcaa----ttgtgttaaacaatttgttccacactt-ttaat----ttgca-cgaca |
49690497 |
T |
|
| Q |
301 |
taaatatatcctttaaatccaattgacacgctggttgacttggaaaatgagtaccacacaagt |
363 |
Q |
| |
|
||||||||| |||| || | |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49690496 |
taaatatattctttgaagcaaattgacacgctagttgacttggaaaatgagtaccacacaagt |
49690434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 49679151 - 49678949
Alignment:
| Q |
1 |
ttaactggacatacttcatagcagttttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtattt |
100 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49679151 |
ttaactggacgtgcttcatagcagttttgttgagattatcacaaccttgaattgccaatgtaccacagcttgggaattcaactgttgtaaaagggtattt |
49679052 |
T |
|
| Q |
101 |
aagaaacccaagacttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatga |
200 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49679051 |
aatcaa--------ttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatga |
49678960 |
T |
|
| Q |
201 |
gagaacaaaag |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
49678959 |
gagaacaaaag |
49678949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 49686508 - 49686316
Alignment:
| Q |
19 |
tagcagttttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttcc |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || || |||||| |||| |
|
|
| T |
49686508 |
tagcagttttgttgagatcgtcacaaccttgaattgccaatgcaccacagtttgggaattcaactgtggtaaaagggtagccaaccaatccaagatttcc |
49686409 |
T |
|
| Q |
119 |
acaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
49686408 |
acaatcaaatgattctggacaatcatcactgtgtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaag |
49686316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 49678820 - 49678771
Alignment:
| Q |
319 |
ccaattgacacgctggttgacttggaaaatgagtaccacacaagtattat |
368 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
49678820 |
ccaattgacacgttagttgacttgtaaaatgagtaccacacaagtcttat |
49678771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University