View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_25 (Length: 360)
Name: NF7947_low_25
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 27493580 - 27493938
Alignment:
| Q |
1 |
aaaactccttaaatttaaggaatgggaggagccagaatttctccagtcaaaaagaaaataaacaaat---------aatgaattaattaatacactttag |
91 |
Q |
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| T |
27493580 |
aaaactctttaaatttaaggaatgggaggagccagaatttctcctgtaaaaaagaaaataaacaaattaaataaataatgaattaattaatacactttag |
27493679 |
T |
|
| Q |
92 |
ataagagggatgaatataataattgaggaattaattnnnnnnn---cattgaaagagatagatcaattatagtaaagtaccctgataaataagcaacagg |
188 |
Q |
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| T |
27493680 |
ataagagggatggatataataattgaggaattaataaaaaaaaaaacaatgaaagagatagatcaatgatagtaaagtaccctgataaataagcaacagg |
27493779 |
T |
|
| Q |
189 |
agcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaattcttgtaccaagagtcaaacctgaa |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27493780 |
agcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaattcttgtaccaagagtcaagcctgaa |
27493879 |
T |
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| Q |
289 |
tatattaactgtatcaataacataaccattattggtaagtagtactccatgttgaaatt |
347 |
Q |
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| T |
27493880 |
tatattaactgtatcaataacataaccattattggtaagtagtactccatgttgaaatt |
27493938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 166 - 341
Target Start/End: Complemental strand, 466672 - 466497
Alignment:
| Q |
166 |
taccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaattc |
265 |
Q |
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| T |
466672 |
taccctgataaataagcgaggggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattc |
466573 |
T |
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| Q |
266 |
ttgtaccaagagtcaaacctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgtt |
341 |
Q |
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| T |
466572 |
ttgtgccaagagtctgacctgcaaatattaactgtatcaacaacataactattattggcaggtagtactccatgtt |
466497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 479615 - 479438
Alignment:
| Q |
163 |
aagtaccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaa |
262 |
Q |
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|||||||| || |||||||||||||||||||||| ||||||||||| ||||| || || |||||||||| | | || |||||||||| ||||| ||||| |
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| T |
479615 |
aagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaa |
479516 |
T |
|
| Q |
263 |
ttcttgtaccaagagtcaaacctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgt |
340 |
Q |
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||||||| |||| | |||||||| |||||| |||| |||||| | |||| |||||||||| | |||||||||||||| |
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| T |
479515 |
ttcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt |
479438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 165 - 340
Target Start/End: Complemental strand, 474139 - 473964
Alignment:
| Q |
165 |
gtaccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaatt |
264 |
Q |
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|||||| || |||||||||| ||||||||||||||||||||||||||| || |||||||||||||| | ||||||| |||||||||||| | | |
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| T |
474139 |
gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgact |
474040 |
T |
|
| Q |
265 |
cttgtaccaagagtcaaacctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgt |
340 |
Q |
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| T |
474039 |
cttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgt |
473964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 445865 - 445769
Alignment:
| Q |
173 |
ataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaattcttgt |
269 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| || || | |||||||||| || |||| ||||||||||||| |||||||||| |
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| T |
445865 |
ataaataagcaattggagcaagaaaaatggttgcaaaagcattacggtacattacaaataccgccgggctcataccctccaaaagtgcaattcttgt |
445769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 454956 - 454879
Alignment:
| Q |
166 |
taccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactc |
243 |
Q |
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||||| ||||||||||||| |||||||||| ||||||||||||||||| || || |||| |||||| |||||||| |
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| T |
454956 |
tacccagataaataagcaatgggagcaagaagaatggttgcaaaagcatgacggtaaactataaatactcttggactc |
454879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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