View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_26 (Length: 355)
Name: NF7947_low_26
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 3098418 - 3098634
Alignment:
| Q |
17 |
cctgtgttattatttttcaaaaacacatcaaattttgtccatagcatgagtaaagaggatggcttccttgtaaagataagatttgattgtgtactaattt |
116 |
Q |
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| T |
3098418 |
cctgtgttattatttttcaaaaacacatcaaattttgtccatagcatgagtaaagaggatcgcttccttgtaaagataagatttgattgtgtactaattt |
3098517 |
T |
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| Q |
117 |
cacctctaaatgctttccaacaatcatttagcagctgcaaatacaaagcagtcaccgtctagatttttaactttaaaaccaaagagtaataaatgttaaa |
216 |
Q |
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| T |
3098518 |
cacctctaaatgctttccaacaatcatttagcagctgc-aatacaaagcagtcaccgtctagatttttaactttaaaaccaaagagtaataaatgttaaa |
3098616 |
T |
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| Q |
217 |
atagtttttaaaattgtg |
234 |
Q |
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| T |
3098617 |
atagtttttaaaattgtg |
3098634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 3092335 - 3092494
Alignment:
| Q |
21 |
tgttattatttttcaaaaacacatcaaattttgtccatagcatgagtaaagaggatggcttccttgtaaagataagatttgattgtgtactaatttcacc |
120 |
Q |
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||||||||||||||||| ||| ||| | |||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
3092335 |
tgttattatttttcaaagacagttcatcctctgtccatattgtgactaaagaggatcgcttccttgtaaagataagatttgattgtgtact---ttcact |
3092431 |
T |
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| Q |
121 |
tctaaatgctttccaacaatcatttagcagctgcaaatacaaagcagtcaccgtctagatttt |
183 |
Q |
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| T |
3092432 |
tctgaatgctttccaacaatcatttagcagctgcaaaaacaaagcaatcaccatctagatttt |
3092494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 320 - 355
Target Start/End: Original strand, 3099147 - 3099182
Alignment:
| Q |
320 |
gagatgaatcttgaataatatagttgatgaacaaac |
355 |
Q |
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| T |
3099147 |
gagatgaatcttgaataatatagttgatgaacaaac |
3099182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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