View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_3 (Length: 548)
Name: NF7947_low_3
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Complemental strand, 43673111 - 43672599
Alignment:
| Q |
15 |
atatcaaacagcagagttgaagatcttaataaagaaccctaatgaaatcaaaactgatgaagttaataataacattgtttctcatcaaatactatactaa |
114 |
Q |
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| T |
43673111 |
atatcaaacagcagagttgaagatcttaataaagaaccctaatgaaatcaaaactgatgaagttaataataacactgtttctcatcaaatactatactaa |
43673012 |
T |
|
| Q |
115 |
agtctaaaccaccaaatatcgacacaacatctgtcatactcttttaagtttcttccctaccaaactcatatggactaaatagtgataaaaataaagagtg |
214 |
Q |
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| T |
43673011 |
agtctaaaccaccaaatatcgacacaacatctgtcatactcttttaagtttcttccctaccaaactcatatggactaaatagtgataaaaataaagagtg |
43672912 |
T |
|
| Q |
215 |
aggaaggaatgaaggaccatatattatgaaaccaagtcaaccataaaaatggatccgtaagttataagaaactatcaaataaaatggaatcttgcctttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43672911 |
aggaaggaatgaaggaccatatattatgaaaccaagtcaaccataaaaatggatccgtaagttataagaaactatcaaataaaatggaatcttgcctttg |
43672812 |
T |
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| Q |
315 |
caattcatgattatttaattcccctacaatttaactttgcttatttaaaaggagtttataataattattaccaatagtcaattattatttgtcgatccat |
414 |
Q |
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| T |
43672811 |
caattcatgattatttaattcccctacaatttaactttgcttatttaaaaggagtttattata---attaccaatagtcaattattatttgtcgatccat |
43672715 |
T |
|
| Q |
415 |
gaaacaataaataatagagtattaggatgaaatgaaattaaggaggaaagnnnnnnngtgaaattgtattgccctagtagtcccccactagaaacaaagg |
514 |
Q |
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| T |
43672714 |
gaaacaataaataatagagtattaggatgaaatgaaattaaggaggaaagaaaaaaagtgaaattgtattgccctagtagtcccccactagaaacaaagg |
43672615 |
T |
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| Q |
515 |
ttttgtgtagtcaaca |
530 |
Q |
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|||||||||||||||| |
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| T |
43672614 |
ttttgtgtagtcaaca |
43672599 |
T |
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