View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_30 (Length: 310)
Name: NF7947_low_30
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 42 - 297
Target Start/End: Complemental strand, 3341728 - 3341473
Alignment:
| Q |
42 |
gttaggaaagtcaaaatatttacttgcaaatactccaattcttgagactgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaa |
141 |
Q |
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| T |
3341728 |
gttaggaaagtcaaaatatttacttgcaaatactccaattcttgagattgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaa |
3341629 |
T |
|
| Q |
142 |
tattttagcatagtcatctagacatggatcataaccacccattacctttggtatctagtttaacaaatgcacaaggtagtgttagaagtttttaagccta |
241 |
Q |
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| T |
3341628 |
tattttagcatagtcatctagacatggatcataaccacccattacctttggtatctagtttaacaaatgcacaaggtagtgttacaagtttttaagccta |
3341529 |
T |
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| Q |
242 |
aaaacacttaaagagagattctgataaaaataaaattttctaatctcaccatgtct |
297 |
Q |
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| T |
3341528 |
aaaacacttaaagagagactctgataaaaataaaattttctaatctcaccatgtct |
3341473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 226
Target Start/End: Complemental strand, 3334256 - 3334086
Alignment:
| Q |
56 |
aatatttacttgcaaatactccaattcttgagactgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagt |
155 |
Q |
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| T |
3334256 |
aatatatacttgcaaatactccaattccttagactatgaccatcactggcatgaagggctttctgaacatctggtttgttgtaaaaagctttagcatagt |
3334157 |
T |
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| Q |
156 |
catctagacatggatcataaccacccattacctttggtatctagtttaacaaatgcacaaggtagtgttag |
226 |
Q |
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| T |
3334156 |
catccaaacatggatcataaccacccatgatccttggtatctagtcaaccaaatccacaaagaagtgttag |
3334086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3341754 - 3341725
Alignment:
| Q |
1 |
ttaacatcataaacaaacaaataagtgtta |
30 |
Q |
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| T |
3341754 |
ttaacatcataaacaaacaaataagtgtta |
3341725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 35793188 - 35793310
Alignment:
| Q |
61 |
ttacttgcaaatactccaattcttgagactgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagtcatct |
160 |
Q |
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|||||||||||||||||||||||| ||| | ||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
35793188 |
ttacttgcaaatactccaattctttagattatgaccatcactagcatgaagggccttctgaacatctggtctgttatagaaagctttagcatagtcatcc |
35793287 |
T |
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| Q |
161 |
agacatggatcataaccacccat |
183 |
Q |
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| T |
35793288 |
aagcatgggtcataaccacccat |
35793310 |
T |
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