View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_31 (Length: 305)
Name: NF7947_low_31
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 30573142 - 30572855
Alignment:
| Q |
1 |
tgtcaacttcatccaccttcttcagctcttccgtcaaactcataagttatttgttgagcatgttgatgttttgatttcgagaaggcttaacattttgctt |
100 |
Q |
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| T |
30573142 |
tgtcaacttcatccaccttcttcagctcttccgtcaaactcataagttatttgttgagcatgttgatgttttgatttcgagaaggcttaacattttgttt |
30573043 |
T |
|
| Q |
101 |
tgatgattcacattgttcttcatgaagctactcctcagtcacagcctgaaaaggcatagataagttgaattatttacaattcctgcaatatcatagaatc |
200 |
Q |
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| T |
30573042 |
tgatgattcacattgttcttcatgaagctactcctcagtcacagcctcaaaaggcatagataagttgaattatttacaattcctgcaatatcatagaatc |
30572943 |
T |
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| Q |
201 |
atatagttatattctataaaaccctagccatccatttctaatcatacagtaaaagaataaacaatagatataattttgttcatttctt |
288 |
Q |
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| T |
30572942 |
atatagttatattctataaaaccctagccatcaatttctaatcatacagtaaaagaataaacaatagatataattttgttcatttctt |
30572855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 54 - 288
Target Start/End: Complemental strand, 30569555 - 30569321
Alignment:
| Q |
54 |
ttgagcatgttgatgttttgatttcgagaaggcttaacattttgctttgatgattcacattgttcttcatgaagctactcctcagtcacagcctgaaaag |
153 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||| |
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| T |
30569555 |
ttgagcatgttgatgttttgattttgagaaggctttacattttgtcttgatgattcacgttgtccttcatgaaggtactcctcagtcacagcctgaaaaa |
30569456 |
T |
|
| Q |
154 |
gcatagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctagccatccatttctaatcatacagtaaa |
253 |
Q |
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| T |
30569455 |
gcatagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctagccatccatttctaatcatacagtaaa |
30569356 |
T |
|
| Q |
254 |
agaataaacaatagatataattttgttcatttctt |
288 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
30569355 |
agaataaacaatagatataattttgttcatttctt |
30569321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 38419561 - 38419461
Alignment:
| Q |
45 |
agttatttgttgagcatgttgatgttttgatttcgagaaggcttaacattttgctttgatgattcacattgttcttcatgaagctactcctcagtcacag |
144 |
Q |
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|||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| || |||| ||||||| ||| | | |||||||| |
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| T |
38419561 |
agttctttgttgagcttgttgatgttttggtttcgagaaggcttaacattttttcttgatgattcaccttcttctccatgaaggtacacattagtcacag |
38419462 |
T |
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| Q |
145 |
c |
145 |
Q |
| |
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| |
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| T |
38419461 |
c |
38419461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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