View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_34 (Length: 267)
Name: NF7947_low_34
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 14231580 - 14231790
Alignment:
| Q |
25 |
atacacgtgggaaatttgaaatcctagaagtttaacgatgccaaaattttcggatgtcatcaataatgtgaattattttatatggtttaaaattttatgg |
124 |
Q |
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| T |
14231580 |
atacacgtgggaaatttgaaatcctgtaagtttaacaatgccaaaattttcggatgtcatcaataatgtgaattattttatatggtttaaaattttatgg |
14231679 |
T |
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| Q |
125 |
taggtctcaatgttatatgttaccattgccatataacattattaagaaacaaaacaggagttcttaagaaattacaaatggatcattcctatcaatggcg |
224 |
Q |
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| T |
14231680 |
taggtctcaatgttatatgttaccattgccatataacattattaagaaagaaaacaggagttcttaagaaattacaaatggatcattcctatcaatggcg |
14231779 |
T |
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| Q |
225 |
tgaagaataat |
235 |
Q |
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| T |
14231780 |
tgaagaataat |
14231790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 14869490 - 14869421
Alignment:
| Q |
27 |
acacgtgggaaatttgaaatcctagaagtttaacgatgccaaaattttcggatgtcatcaataatgtgaa |
96 |
Q |
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| T |
14869490 |
acacatgggaaagttggaatcttacaagtttaataattccaaaattttgggatgtcatcaatattgtgaa |
14869421 |
T |
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