View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7947_low_35 (Length: 265)

Name: NF7947_low_35
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7947_low_35
NF7947_low_35
[»] chr8 (4 HSPs)
chr8 (9-248)||(14002083-14002325)
chr8 (144-237)||(5768911-5768996)
chr8 (17-67)||(15216069-15216119)
chr8 (25-66)||(30579033-30579074)
[»] chr1 (4 HSPs)
chr1 (17-67)||(13027298-13027348)
chr1 (22-67)||(35829195-35829240)
chr1 (17-67)||(32083542-32083592)
chr1 (17-67)||(37463659-37463709)
[»] chr4 (2 HSPs)
chr4 (17-66)||(16002350-16002399)
chr4 (17-67)||(39707897-39707947)
[»] chr3 (2 HSPs)
chr3 (18-67)||(9258321-9258370)
chr3 (17-67)||(29816940-29816990)
[»] chr7 (4 HSPs)
chr7 (17-67)||(36870086-36870136)
chr7 (17-67)||(21520230-21520280)
chr7 (17-67)||(32630043-32630093)
chr7 (26-67)||(20499544-20499585)
[»] chr2 (3 HSPs)
chr2 (22-67)||(13148757-13148802)
chr2 (17-67)||(24584403-24584453)
chr2 (22-67)||(876589-876634)
[»] chr6 (3 HSPs)
chr6 (17-67)||(5258947-5258997)
chr6 (17-67)||(5631252-5631302)
chr6 (17-67)||(20428434-20428484)
[»] chr5 (4 HSPs)
chr5 (17-67)||(3301284-3301334)
chr5 (17-67)||(3394146-3394196)
chr5 (16-53)||(14099775-14099812)
chr5 (22-67)||(43558608-43558653)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 14002083 - 14002325
Alignment:
Q  9 tatgtgcgaaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcctatgaaaaagacttcaaa-----tgtcaggtttccattcct 103  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||      ||||||||||||||||||    
T  14002083 tatgtgcgaaaaacatacatcttcgtgctagctcttg-atgtgtttggtaagtacatcctatgaaaaagacttcaatataattgtcaggtttccattcct 14002181  T
Q  104 agaccgcataaatttaaccaatctcactgtctcacccactgtcttgtgaaattgtaatacaccaaagttgcatttccatcttcaatcctcttcagccctt 203  Q
    ||||| || || |||| |||| ||||| |||||| ||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14002182 agaccacagaattttagccaacctcaccgtctcagccactga-ttgtgaaattgtaatacaccaaagttgtatttccatcttcaatcctcttcagccctt 14002280  T
Q  204 caaatgtcttgtaacagcaatagaaaatagatatcaacaatatta 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14002281 caaatgtcttgtaacagcaatagaaaatagatatcaacaatatta 14002325  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 5768996 - 5768911
Alignment:
Q  144 gtcttgtgaaattgtaatacaccaaagttgcatttccatcttcaatcctcttcagcccttcaaatgtcttgtaacagcaatagaaaatagatat 237  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||    
T  5768996 gtcttgtgaagttgtaatacaccaaagttgcatttccatcttcaatcctc--------ttcaaatgtcttgtaacagaaatagaaaatagatat 5768911  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 15216069 - 15216119
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    ||||||||||||||| |||||| ||||||||||||||| || |||||||||    
T  15216069 aaaaacatacatctcggtgctaactcttggatgtgttctgtcagtacatcc 15216119  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 30579033 - 30579074
Alignment:
Q  25 acatctccgtgctagctcttggatgtgttcggtaagtacatc 66  Q
    ||||||| ||||||||||||| |||||||| |||||||||||    
T  30579033 acatctcagtgctagctcttgtatgtgttctgtaagtacatc 30579074  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 13027298 - 13027348
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  13027298 aaaaacatacatctcagtgctagctcttggatgttttctgtaagtacatcc 13027348  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 35829195 - 35829240
Alignment:
Q  22 catacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||    
T  35829195 catacatatcggtgctagctcttggatgtgttctgtaagtacatcc 35829240  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 32083542 - 32083592
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  32083542 aaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatcc 32083592  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 37463659 - 37463709
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| |||||||||| |||||| ||||||||||||||| ||||| ||||||    
T  37463659 aaaagcatacatctcggtgctaactcttggatgtgttccgtaagaacatcc 37463709  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 16002399 - 16002350
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatc 66  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  16002399 aaaaacatacatctcggtgctaactcttggatgtgttccgtaagtacatc 16002350  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 39707947 - 39707897
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||||||||||| || |||| | ||||||||||||||| ||||||||||||    
T  39707947 aaaaacatacatatcggtgcaaactcttggatgtgttctgtaagtacatcc 39707897  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 9258370 - 9258321
Alignment:
Q  18 aaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  9258370 aaaacatacatctcggtgctaactcttggatgtgttccgtaagtacatcc 9258321  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 29816990 - 29816940
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    ||||||||||||||| |||||| |||| |||||||||  ||||||||||||    
T  29816990 aaaaacatacatctcggtgctaactctaggatgtgttttgtaagtacatcc 29816940  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 36870086 - 36870136
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| |||||||||| |||||||||||||||||||||| || |||||||||    
T  36870086 aaaagcatacatctcggtgctagctcttggatgtgttccgtcagtacatcc 36870136  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 21520230 - 21520280
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| |||||||||| |||||| ||||||||||||||| |||| |||||||    
T  21520230 aaaagcatacatctcggtgctaactcttggatgtgttccgtaaatacatcc 21520280  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 32630093 - 32630043
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  32630093 aaaagcatacatctcggtgctaactcttggatgtgttccgttagtacatcc 32630043  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 20499585 - 20499544
Alignment:
Q  26 catctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||||| |||||||||||||||||||||| | ||||||||||    
T  20499585 catctcggtgctagctcttggatgtgttccgcaagtacatcc 20499544  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 13148802 - 13148757
Alignment:
Q  22 catacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||||||||  |||||||||||||||||||||| ||||||||||||    
T  13148802 catacatcttagtgctagctcttggatgtgttctgtaagtacatcc 13148757  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 24584403 - 24584453
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    ||||||||||||||| ||| || ||||||||||||||| || |||||||||    
T  24584403 aaaaacatacatctcggtgataactcttggatgtgttccgttagtacatcc 24584453  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 876634 - 876589
Alignment:
Q  22 catacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||||||||  ||||| |||||||||||||||| ||||||||||||    
T  876634 catacatcttggtgctcgctcttggatgtgttccgtaagtacatcc 876589  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 5258947 - 5258997
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  5258947 aaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatcc 5258997  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 5631302 - 5631252
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||||||| |||||| |||||| ||||||||||||||| || |||||||||    
T  5631302 aaaaacatgcatctcggtgctaactcttggatgtgttccgtcagtacatcc 5631252  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 20428434 - 20428484
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| |||||||||| |||||| |||||| |||||||| ||||||||||||    
T  20428434 aaaagcatacatctcggtgctaactcttgaatgtgttccgtaagtacatcc 20428484  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 3301334 - 3301284
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  3301334 aaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatcc 3301284  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 3394196 - 3394146
Alignment:
Q  17 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  3394196 aaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatcc 3394146  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 14099812 - 14099775
Alignment:
Q  16 gaaaaacatacatctccgtgctagctcttggatgtgtt 53  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  14099812 gaaaaacatacatctcggtgctagctcttgcatgtgtt 14099775  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 43558608 - 43558653
Alignment:
Q  22 catacatctccgtgctagctcttggatgtgttcggtaagtacatcc 67  Q
    |||| ||||| ||| |||||||||||||||||| ||||||||||||    
T  43558608 catatatctcggtgttagctcttggatgtgttccgtaagtacatcc 43558653  T

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