View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7947_low_36 (Length: 264)

Name: NF7947_low_36
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7947_low_36
NF7947_low_36
[»] chr5 (5 HSPs)
chr5 (53-264)||(19993170-19993381)
chr5 (1-59)||(19990988-19991046)
chr5 (65-115)||(22903117-22903167)
chr5 (87-148)||(19846060-19846121)
chr5 (65-140)||(27083255-27083329)
[»] chr1 (9 HSPs)
chr1 (65-148)||(26977731-26977814)
chr1 (69-182)||(34273044-34273157)
chr1 (65-129)||(12177396-12177460)
chr1 (69-240)||(5459730-5459900)
chr1 (65-129)||(5671780-5671844)
chr1 (65-181)||(25408054-25408170)
chr1 (65-125)||(16030409-16030469)
chr1 (65-169)||(16050364-16050468)
chr1 (65-129)||(33101524-33101588)
[»] chr4 (6 HSPs)
chr4 (65-167)||(47253249-47253351)
chr4 (65-148)||(19809692-19809775)
chr4 (65-169)||(12683755-12683859)
chr4 (82-169)||(10981836-10981923)
chr4 (65-112)||(19643729-19643776)
chr4 (65-115)||(14003081-14003131)
[»] chr2 (12 HSPs)
chr2 (65-235)||(19919083-19919253)
chr2 (69-230)||(27846540-27846701)
chr2 (1-54)||(45258069-45258122)
chr2 (65-233)||(12127680-12127848)
chr2 (65-115)||(15825178-15825228)
chr2 (64-218)||(45714916-45715070)
chr2 (65-114)||(12168998-12169047)
chr2 (65-129)||(24499799-24499863)
chr2 (65-115)||(3586387-3586437)
chr2 (65-115)||(18770338-18770388)
chr2 (65-115)||(36267522-36267572)
chr2 (75-115)||(20120371-20120411)
[»] chr8 (10 HSPs)
chr8 (65-129)||(6928107-6928171)
chr8 (65-244)||(26916915-26917094)
chr8 (65-216)||(30477564-30477715)
chr8 (65-115)||(21416762-21416812)
chr8 (65-113)||(17698302-17698350)
chr8 (69-115)||(13754782-13754828)
chr8 (65-167)||(18322915-18323017)
chr8 (75-129)||(23269256-23269310)
chr8 (68-122)||(24070869-24070923)
chr8 (75-115)||(3459511-3459551)
[»] chr6 (8 HSPs)
chr6 (65-169)||(30680962-30681066)
chr6 (65-132)||(689874-689941)
chr6 (65-112)||(3404879-3404926)
chr6 (65-115)||(19305488-19305538)
chr6 (82-140)||(34187298-34187356)
chr6 (65-121)||(10115702-10115758)
chr6 (87-148)||(9277339-9277400)
chr6 (92-129)||(16343589-16343626)
[»] chr3 (9 HSPs)
chr3 (65-115)||(17143766-17143816)
chr3 (66-232)||(2311852-2312018)
chr3 (65-129)||(30606938-30607002)
chr3 (65-168)||(431333-431436)
chr3 (65-116)||(9801101-9801152)
chr3 (65-115)||(1770849-1770899)
chr3 (65-115)||(21342304-21342354)
chr3 (65-111)||(28715505-28715551)
chr3 (88-148)||(12516176-12516236)
[»] scaffold0023 (1 HSPs)
scaffold0023 (65-162)||(95827-95924)
[»] scaffold0074 (1 HSPs)
scaffold0074 (65-116)||(35276-35327)
[»] scaffold0034 (1 HSPs)
scaffold0034 (104-203)||(18526-18625)
[»] scaffold0140 (1 HSPs)
scaffold0140 (65-115)||(6322-6372)
[»] scaffold0360 (1 HSPs)
scaffold0360 (68-115)||(13946-13993)
[»] scaffold0002 (1 HSPs)
scaffold0002 (65-112)||(121028-121075)
[»] chr7 (7 HSPs)
chr7 (65-132)||(5929028-5929095)
chr7 (65-184)||(13292140-13292259)
chr7 (80-129)||(43172059-43172108)
chr7 (65-129)||(7486555-7486619)
chr7 (1-41)||(16203856-16203896)
chr7 (65-129)||(21161251-21161315)
chr7 (65-169)||(39879357-39879461)
[»] scaffold0294 (1 HSPs)
scaffold0294 (65-115)||(260-310)
[»] scaffold0054 (1 HSPs)
scaffold0054 (87-139)||(68839-68891)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 53 - 264
Target Start/End: Original strand, 19993170 - 19993381
Alignment:
Q  53 agcgcctacatattttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttc 152  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  19993170 agcgcctacatattttcacaacactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtgtctgcaagaaccttttttc 19993269  T
Q  153 ccaccacgaagactcattgcctccgtaccggagaactctctgccaccgttgactctcgtccatccttgccggacagatcatttggcgctagagactatga 252  Q
    ||||| |||||||||| | |||||||||||||| ||| || |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19993270 ccaccgcgaagactcaatccctccgtaccggagcactttccgccaccgttgcctctcgtccatccttgccggacatatcatttggcgttagagactatga 19993369  T
Q  253 agtgaaaacaat 264  Q
    ||||| ||||||    
T  19993370 agtgacaacaat 19993381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19990988 - 19991046
Alignment:
Q  1 ctaaccgctccctaatcacacgccgcgaaacttggagacggctattgtcacgagcgcct 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19990988 ctaaccgctccctaatcacacgccgcgaaacttggagacggctatcgtcacgagcgcct 19991046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 22903167 - 22903117
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  22903167 ttttcacaacactttctacacactctttctcagttccattactgacttgag 22903117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 19846121 - 19846060
Alignment:
Q  87 ctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttt 148  Q
    |||||||| ||||||| ||||||||||||| || || ||||||||| |||||||| ||||||    
T  19846121 ctctttcttagttccaatactgacttgagtgttagagtgctaatgtgtctgcaggcaccttt 19846060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 27083255 - 27083329
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcag 140  Q
    ||||||||| |||||| |||| ||||||| ||||| | |||||||||||||| ||||| |||||| || |||||||    
T  27083255 ttttcacaacactttctacacactctttcacagtttc-ttactgacttgagtgttggagtgctaacgtgtctgcag 27083329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 26977814 - 26977731
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttt 148  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||||||||  ||||| |||||| ||  ||||||| ||||||    
T  26977814 ttttcacaatactttctacacactctttctcggttccattactgacttgagcgttggagtgctaacgtgcctgcaggcaccttt 26977731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 34273157 - 34273044
Alignment:
Q  69 cacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaagactca 168  Q
    ||||| |||||| |||| ||||||||||||||| ||||||||||||| |||||| |||||| ||   |||||| ||||||  ||||||| | |||||||     
T  34273157 cacaacactttctacacactctttctcagttccgttactgacttgagcattggagtgctaacgtgcttgcaggtacctttcgtcccaccgcaaagactcc 34273058  T
Q  169 ttgcctccgtaccg 182  Q
    | ||| ||||||||    
T  34273057 tcgccaccgtaccg 34273044  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 12177460 - 12177396
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||| | ||| ||||||    
T  12177460 ttttcacaacactttctacacactctttctcagttccattactgacttgagtgtcggagtgctaa 12177396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 5459730 - 5459900
Alignment:
Q  69 cacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaagactca 168  Q
    ||||| |||||| |||| |||||||||||| || ||||||  ||||   ||||| |||||| ||  ||||| | ||||||  ||||||||||||||||||    
T  5459730 cacaacactttctacacactctttctcagt-ccgttactgttttgaacgttggagtgctaacgtacctgcatgcacctttcgtcccaccacgaagactca 5459828  T
Q  169 ttgcctccgtaccggagaactctctgccaccgttgactctcgtccatccttgccggacagatcatttggcgc 240  Q
    | ||| ||||||| ||| ||  || |||| ||| | ||||| ||||||||  ||||| ||||||||||||||    
T  5459829 tcgccaccgtaccagagcacattccgccatcgtcgcctctcatccatcctcaccggatagatcatttggcgc 5459900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 5671844 - 5671780
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    ||||||||| |||||| |||| ||||||||||||||||||||| |||||||  ||||| ||||||    
T  5671844 ttttcacaacactttctacacactctttctcagttccattactaacttgagcgttggagtgctaa 5671780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 25408170 - 25408054
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||| ||||   |||| |||| | |||||| ||||||||||||||| |||||| |||||| || |||||||| ||||||  | ||||| |  |||    
T  25408170 ttttcacaacacttcttacacactctctttcagtttcattactgacttgagcattggagtgctaacgtgtctgcaggcacctttcattccaccgcagaga 25408071  T
Q  165 ctcattgcctccgtacc 181  Q
    ||||||||| |||||||    
T  25408070 ctcattgccgccgtacc 25408054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 16030469 - 16030409
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactg 125  Q
    ||||||||| |||||| |||| |||||  |||||||||||||||||||||| ||| |||||    
T  16030469 ttttcacaacactttctacacactcttattcagttccattactgacttgagcatttgactg 16030409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 16050468 - 16050364
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||| | |||||| |||| ||||||||||||||||| | |||||||||  ||||| |||||| ||  ||||||  |||||| |  ||||| ||||||    
T  16050468 ttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtgctaacgtgcctgcagatacctttctatccaccgcgaaga 16050369  T
Q  165 ctcat 169  Q
    |||||    
T  16050368 ctcat 16050364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 33101524 - 33101588
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    ||||||||| |||||| |||| || ||||||||||||||||| ||||||||  ||||| ||||||    
T  33101524 ttttcacaacactttctacacactttttctcagttccattaccgacttgagcgttggagtgctaa 33101588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 47253351 - 47253249
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||| |||||  |||| |||||||||||||||||||||||||||||  ||||| ||||||  |  ||||| | ||||||| ||||||| ||||||    
T  47253351 ttttcacaacactttttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcctgcaagcaccttttgtcccaccccgaaga 47253252  T
Q  165 ctc 167  Q
    |||    
T  47253251 ctc 47253249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 19809775 - 19809692
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttt 148  Q
    ||||||||| |||||| |||| |||||||| |||| |||||||||||||||  ||||| ||||||  | |||||||||||||||    
T  19809775 ttttcacaacactttctacacactctttcttagtttcattactgacttgagcgttggagtgctaacatgtctgcaggaaccttt 19809692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 12683859 - 12683755
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||| |||||| |||| ||||||||||||| ||||||| |||||||  ||||| |||||| ||  ||||||| ||||||  | ||||| | ||||    
T  12683859 ttttcacaacactttctacacactctttctcagtttcattactaacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaaga 12683760  T
Q  165 ctcat 169  Q
    |||||    
T  12683759 ctcat 12683755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 10981923 - 10981836
Alignment:
Q  82 acacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaagactcat 169  Q
    |||| ||||||||| |||||||||||||||||||| ||||| ||| || ||  ||||||| ||||||  ||||||  |||||||||||    
T  10981923 acacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtcccactgcgaagactcat 10981836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 19643776 - 19643729
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgactt 112  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  19643776 ttttcacaagactttctacacactctttctcagttccattactgactt 19643729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 14003081 - 14003131
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    |||||| || |||||| |||  |||||||||||||||||||||||||||||    
T  14003081 ttttcataacactttccacaaactctttctcagttccattactgacttgag 14003131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 19919083 - 19919253
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||| |||||| |||  |||||||||| |||||||| ||||||  |  || || | |||||||  ||||||| ||||||  | ||||||||||||    
T  19919083 ttttcacaacactttctacatactctttctcatttccattattgactttggcgttagagttctaatgttcctgcaggcacctttcgttccaccacgaaga 19919182  T
Q  165 ctcattgcctccgtaccggagaactctctgccaccgttgactctcgtccatccttgccggacagatcattt 235  Q
    || || ||| || |||||||| ||| ||||||||| ||| ||||| ||||| ||  ||||||| |||||||    
T  19919183 ctgatcgccaccataccggagcactttctgccaccattgcctctcatccattctcaccggacatatcattt 19919253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 27846540 - 27846701
Alignment:
Q  69 cacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaagactca 168  Q
    ||||| |||||| |||  || |||||||||||||||||||||||||   ||||| |||||| ||  ||||||| || |||  ||| ||  ||||||||||    
T  27846540 cacaacactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcctgcaggcacttttcgtccaactgcgaagactca 27846639  T
Q  169 ttgcctccgtaccggagaactctctgccaccgttgactctcgtccatccttgccggacagat 230  Q
    ||||| ||||||||||  ||  || | ||| |||| ||||| ||||||||  ||||||||||    
T  27846640 ttgccaccgtaccggaacacattccgtcactgttgcctctcatccatcctctccggacagat 27846701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45258069 - 45258122
Alignment:
Q  1 ctaaccgctccctaatcacacgccgcgaaacttggagacggctattgtcacgag 54  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||    
T  45258069 ctaaccgctccctaatcacacgccgcaaaactcggagacggttatcgtcacgag 45258122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 233
Target Start/End: Original strand, 12127680 - 12127848
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||| |||||| |||| | | |||| |||| |||||||||||||||  ||||| |||||| ||  ||||||| ||||||  ||||||| ||||||    
T  12127680 ttttcacaacactttctacacacacgttcttagtttcattactgacttgagcgttggagtgctaacgtgcctgcaggtacctttcgtcccaccgcgaaga 12127779  T
Q  165 ctcattgcctccgtaccggagaactctctgccaccgttgactctcgtccatccttgccggacagatcat 233  Q
    | |||  || |||||||| || | | |||||||  |||| ||||| || |||||| | ||||| |||||    
T  12127780 cccatcaccaccgtaccgaagcattttctgccaatgttgcctctcatctatccttactggacatatcat 12127848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 15825228 - 15825178
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| |||| |||||||||||||||||||| ||||||||    
T  15825228 ttttcacaacactttctacacactctttctcagttccattaccgacttgag 15825178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 45715070 - 45714916
Alignment:
Q  64 attttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaag 163  Q
    |||||||| | |||||  |||| ||||||||||||| |||||||||||||||  ||||| |||||| ||  ||||| | ||||||  | |||||| ||||    
T  45715070 attttcaccacactttttacacactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcctgcatgcacctttcgttccaccaggaag 45714971  T
Q  164 actcattgcctccgtaccggagaactctctgccaccgttgactctcgtccatcct 218  Q
    |||||| |||   ||||||||| ||| || ||||  |||| | ||| ||||||||    
T  45714970 actcatcgccaatgtaccggagcactttccgccattgttgccactcatccatcct 45714916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 12169047 - 12168998
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttga 114  Q
    ||||||||| |||||| |||| |||||||| |||||||||||||||||||    
T  12169047 ttttcacaacactttctacacactctttcttagttccattactgacttga 12168998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 24499863 - 24499799
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    ||||||||| | |||| |||| |||||||||| ||||||||||||||||||  ||||| ||||||    
T  24499863 ttttcacaacattttctacacactctttctcatttccattactgacttgagcgttggagtgctaa 24499799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 3586437 - 3586387
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| || | || ||||||||||||||||||||||||||    
T  3586437 ttttcacaacactttctactcactttttctcagttccattactgacttgag 3586387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 18770388 - 18770338
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| |||| |||||||||| || |||||||||||||||    
T  18770388 ttttcacaacactttctacacactctttctcaatttcattactgacttgag 18770338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 36267572 - 36267522
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    |||||||||  ||||| |||| ||||||||||||| |||||||||||||||    
T  36267572 ttttcacaaccctttctacacactctttctcagtttcattactgacttgag 36267522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 20120411 - 20120371
Alignment:
Q  75 actttcaacacgctctttctcagttccattactgacttgag 115  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  20120411 actttccacacactctttctcagtttcattactgacttgag 20120371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 6928107 - 6928171
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||| ||| | ||||||    
T  6928107 ttttcacaacactttctacacactctttctcagttccattactgacttgagtgttgaaatgctaa 6928171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 26916915 - 26917094
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||| |||||| |||| |||| ||||||||||||||||||||||||  || |   ||||| ||  ||  | | ||||||  | ||| ||||||||    
T  26916915 ttttcacaacactttctacacactctctctcagttccattactgacttgagcgttagtgcgctaacgtgcctaaatgcacctttcgttccatcacgaaga 26917014  T
Q  165 ctcattgcctccgtaccggagaactctctgccaccgttgactctcgtccatccttgccggacagatcatttggcgctaga 244  Q
    ||| | ||| | ||||  |||  || ||||||||||||| ||||| ||||||||  ||||||| ||||||||||||||||    
T  26917015 ctcgtcgccactgtactagagccctttctgccaccgttgcctctcatccatcctcaccggacatatcatttggcgctaga 26917094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 30477715 - 30477564
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||| |||||| |||| ||||||||||||| | |||||||||||||  ||||| |||||| ||   |||||  | ||||  || |||| |||||     
T  30477715 ttttcacaacactttctacacactctttctcagtttcgttactgacttgagcgttggagtgctaacgtgcatgcagacatctttcgtctcaccgcgaagt 30477616  T
Q  165 ctcattgcctccgtaccggagaactctctgccaccgttgactctcgtccatc 216  Q
    ||||||||| || ||| |||| ||| || ||||| |||| ||||| ||||||    
T  30477615 ctcattgccaccatactggagcactttccgccactgttgcctctcatccatc 30477564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 21416812 - 21416762
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| |||| ||||||||||||| |||||||||||||||    
T  21416812 ttttcacaacactttctacacactctttctcagtttcattactgacttgag 21416762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 17698302 - 17698350
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttg 113  Q
    ||||||||| |||||| |||| ||||||||| |||||||||||||||||    
T  17698302 ttttcacaacactttctacacactctttctcggttccattactgacttg 17698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 13754828 - 13754782
Alignment:
Q  69 cacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||| |||||| |||| ||||||||||||| |||||||||||||||    
T  13754828 cacaacactttctacacactctttctcagtttcattactgacttgag 13754782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 18323017 - 18322915
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||| | |||| ||||  ||||||||||||| ||||||||||||||  ||||| || |||  | |||||| | ||||||| | ||||| ||||||    
T  18323017 ttttcacaacattttctacacaatctttctcagttctattactgacttgagcgttggagtgttaacatgtctgcatgcaccttttgttccaccgcgaaga 18322918  T
Q  165 ctc 167  Q
    |||    
T  18322917 ctc 18322915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 23269310 - 23269256
Alignment:
Q  75 actttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    |||||| |||| |||||| ||||||||||||||||||| ||| ||||| ||||||    
T  23269310 actttctacacactctttatcagttccattactgacttaagtgttggagtgctaa 23269256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 24070923 - 24070869
Alignment:
Q  68 tcacaatactttcaacacgctctttctcagttccattactgacttgagtattgga 122  Q
    |||||| |||||| |||| |||||||| ||||||||||||||||| ||| |||||    
T  24070923 tcacaacactttctacacactctttcttagttccattactgacttaagtgttgga 24070869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 3459511 - 3459551
Alignment:
Q  75 actttcaacacgctctttctcagttccattactgacttgag 115  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  3459511 actttctacacactcttgctcagttccattactgacttgag 3459551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 30681066 - 30680962
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    |||||||||||| ||| ||||||||||| |||||| |||||||||||||||  ||||| |||||| ||   |||||  ||||||  ||||||| ||||||    
T  30681066 ttttcacaatacattctacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattgcagacacctttcgtcccaccgcgaaga 30680967  T
Q  165 ctcat 169  Q
    |||||    
T  30680966 ctcat 30680962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 689874 - 689941
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgt 132  Q
    ||||||||| |||||  |||| | ||||||||||||||||||||||||||| |||| | |||||||||    
T  689874 ttttcacaacactttatacacacactttctcagttccattactgacttgagcattgcagtgctaatgt 689941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 3404879 - 3404926
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgactt 112  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  3404879 ttttcacaacactttctacacactctttctcagttccattactgactt 3404926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 19305538 - 19305488
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| |||| ||||| |||||||||||||||||||||||    
T  19305538 ttttcacaacactttctacacactcttactcagttccattactgacttgag 19305488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 34187356 - 34187298
Alignment:
Q  82 acacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcag 140  Q
    |||| |||||||||||||||||||||||||||||| ||||  |||||| || |||||||    
T  34187356 acacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgcag 34187298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 10115702 - 10115758
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattgg 121  Q
    ||||||||| |||||  || ||||||||||||||| ||||||||||||||| |||||    
T  10115702 ttttcacaaaactttttactcgctctttctcagtttcattactgacttgagcattgg 10115758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 9277339 - 9277400
Alignment:
Q  87 ctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttt 148  Q
    |||||||||||||||| ||||||||||||  ||  | |||||| || |||||||||||||||    
T  9277339 ctctttctcagttccaatactgacttgagcgttatagtgctaacgtgtctgcaggaaccttt 9277400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 16343626 - 16343589
Alignment:
Q  92 tctcagttccattactgacttgagtattggactgctaa 129  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  16343626 tctcagttccattactgacttgagtgttggagtgctaa 16343589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 17143766 - 17143816
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  17143766 ttttcacaacactttctacacactctttctcagttccattactgacttgag 17143816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 2311852 - 2312018
Alignment:
Q  66 tttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaagac 165  Q
    |||||||| |||||| ||||  |||||||||  ||| || |||| |||||  ||||| |||||| || |||||||  ||||||  | |||||||||||||    
T  2311852 tttcacaacactttctacacattctttctcaaatcccttgctgatttgagcgttggagtgctaacgtatctgcagacacctttcattccaccacgaagac 2311951  T
Q  166 tcattgcctccgtaccggagaactctctgccaccgttgactctcgtccatccttgccggacagatca 232  Q
    || | ||| ||||||||||| ||| |  ||||| |||| ||||| ||||| ||  ||||||| ||||    
T  2311952 tcttcgccaccgtaccggagcactttgcgccactgttgcctctcatccatactcaccggacatatca 2312018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 30607002 - 30606938
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    ||||||||| |||||| || | |||||||||| ||||||||||||||||||  ||||| ||||||    
T  30607002 ttttcacaacactttctactcactctttctcaattccattactgacttgagcgttggaatgctaa 30606938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 431333 - 431436
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||  |||||| || | ||||||||||||||||||| |||||||||  | | | |||||| || |||| ||| |||||| || ||||| ||||||    
T  431333 ttttcacagcactttccacgcactctttctcagttccattattgacttgagcgtcgaagtgctaacgtgtctgtaggcacctttctttccaccgcgaaga 431432  T
Q  165 ctca 168  Q
    ||||    
T  431433 ctca 431436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 9801101 - 9801152
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagt 116  Q
    ||||||||| |||||| |||| ||||||||| |||| |||||||||||||||    
T  9801101 ttttcacaacactttctacacactctttctctgttctattactgacttgagt 9801152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 1770899 - 1770849
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| |||| ||||| ||||||||||||||| |||||||    
T  1770899 ttttcacaacactttctacacactcttcctcagttccattactaacttgag 1770849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 21342304 - 21342354
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| | || |||||| ||||||||||||||||||||||    
T  21342304 ttttcacaacactttctatacactctttatcagttccattactgacttgag 21342354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 28715505 - 28715551
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgact 111  Q
    ||||||||| |||||  |||| |||||||||||||||||||||||||    
T  28715505 ttttcacaacactttatacacactctttctcagttccattactgact 28715551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 12516236 - 12516176
Alignment:
Q  88 tctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttt 148  Q
    |||||||||||||||||||| |||||||  | ||| |||||| || |||||||| ||||||    
T  12516236 tctttctcagttccattactaacttgagcgtcggagtgctaacgtgtctgcaggcaccttt 12516176  T

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Target: scaffold0023 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 95827 - 95924
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaa 162  Q
    ||||||||| |||||| || | ||||||||||||||||||||| |||||||  ||| | || ||| ||  ||||||||||||||| ||||||| ||||    
T  95827 ttttcacaacactttctacgcactctttctcagttccattactaacttgagcgttgaagtggtaacgtgcctgcaggaaccttttgtcccaccgcgaa 95924  T

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Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 35327 - 35276
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagt 116  Q
    ||||||||| |||||| |||| ||||||||||||||| ||||||||||||||    
T  35327 ttttcacaacactttccacacactctttctcagttccgttactgacttgagt 35276  T

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Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 18526 - 18625
Alignment:
Q  104 tactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaagactcattgcctccgtaccggagaactctctgccaccgttg 203  Q
    ||||||||||||| ||||| |||||| || ||||||||||| |||  |  ||||  |||||||||| ||| ||||||||||| ||| |||||||| ||||    
T  18526 tactgacttgagtgttggagtgctaaagtgtctgcaggaacatttcgtttcaccgtgaagactcatcgccaccgtaccggagcactttctgccactgttg 18625  T

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Target: scaffold0140 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 6372 - 6322
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| |||||| |||| || ||||||||||||||||||||||||||    
T  6372 ttttcacaacactttctacacactatttctcagttccattactgacttgag 6322  T

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Target: scaffold0360 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 13993 - 13946
Alignment:
Q  68 tcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    |||||| |||||| |||| ||||||||||||| |||||||||||||||    
T  13993 tcacaacactttctacacactctttctcagtttcattactgacttgag 13946  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 121028 - 121075
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgactt 112  Q
    ||||||||| |||||  |||| ||||||||||||||||||||||||||    
T  121028 ttttcacaacactttatacacactctttctcagttccattactgactt 121075  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 5929028 - 5929095
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgt 132  Q
    ||||||||| ||||   |||| |||| | ||||||||||||||||||||||| ||||| |||||||||    
T  5929028 ttttcacaacacttcttacactctctctttcagttccattactgacttgagtgttggagtgctaatgt 5929095  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 13292140 - 13292259
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    ||||||||| ||||   |||| |||||| |||||| |||||||||||||||  || || |||||| ||  ||||||  ||||||  | ||||||||||||    
T  13292140 ttttcacaacacttcttacacactctttttcagtttcattactgacttgagcgttagagtgctaacgtacctgcagacacctttccttccaccacgaaga 13292239  T
Q  165 ctcattgcctccgtaccgga 184  Q
    ||||| ||| |||| |||||    
T  13292240 ctcatcgccgccgtgccgga 13292259  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 43172059 - 43172108
Alignment:
Q  80 caacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    |||||| | ||||||||||||||||| ||||||||| |||||| ||||||    
T  43172059 caacactcactttctcagttccattattgacttgagcattggagtgctaa 43172108  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 7486619 - 7486555
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    ||||||||| || ||| ||||  |||||||||||||||||||||| |||||  ||||| ||||||    
T  7486619 ttttcacaacaccttctacacaatctttctcagttccattactgaattgagcgttggagtgctaa 7486555  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16203896 - 16203856
Alignment:
Q  1 ctaaccgctccctaatcacacgccgcgaaacttggagacgg 41  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  16203896 ctaaccgctccctaatcacacgccacgaaacacggagacgg 16203856  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 21161315 - 21161251
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 129  Q
    ||||||||| |||||| |||| | |||||| || |||||||||||||||||  ||||| ||||||    
T  21161315 ttttcacaacactttctacacacactttcttagctccattactgacttgagcgttggagtgctaa 21161251  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 39879461 - 39879357
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtctctgcaggaaccttttttcccaccacgaaga 164  Q
    |||| |||| |||||  |||| ||||||||||||| |||||||||||||||  ||  | || ||| || |||||||| ||||||  | ||||||||||||    
T  39879461 tttttacaacactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttccaccacgaaga 39879362  T
Q  165 ctcat 169  Q
     ||||    
T  39879361 ttcat 39879357  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 260 - 310
Alignment:
Q  65 ttttcacaatactttcaacacgctctttctcagttccattactgacttgag 115  Q
    ||||||||| ||||   |||| |||||||||||||||||||||||||||||    
T  260 ttttcacaacacttcttacacactctttctcagttccattactgacttgag 310  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 68839 - 68891
Alignment:
Q  87 ctctttctcagttccattactgacttgagtattggactgctaatgtctctgca 139  Q
    ||||||||||||||||||||| |||||||  ||||| |||||| || ||||||    
T  68839 ctctttctcagttccattactaacttgagcgttggagtgctaacgtgtctgca 68891  T

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