View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7947_low_37 (Length: 263)

Name: NF7947_low_37
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7947_low_37
NF7947_low_37
[»] chr4 (8 HSPs)
chr4 (70-240)||(18674058-18674244)
chr4 (22-132)||(18692219-18692340)
chr4 (181-231)||(18692049-18692099)
chr4 (22-126)||(18682911-18683026)
chr4 (23-75)||(18650551-18650603)
chr4 (70-132)||(18650483-18650545)
chr4 (206-234)||(18650300-18650328)
chr4 (23-75)||(18718770-18718822)
[»] chr6 (2 HSPs)
chr6 (23-60)||(26827304-26827341)
chr6 (70-102)||(27652047-27652079)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 18674244 - 18674058
Alignment:
Q  70 atcagaacttggaagtttctgagacaaaacttgtgttttccatatttggtagaaaagctatttttcttgtgtttcgtgtaattaatagcaagt------- 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  18674244 atcagaacttggaagtttctgagacaaaacttgtgttttccatatttggtagaaaagctatttttcttgtgtttcgtgtaattaatagcaagtgtctttt 18674145  T
Q  163 ---------ctcttgttattgtttctagtcatgtatgtatgattgaagattttgtacatattttcatatcgacagatgatggttcat 240  Q
              ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18674144 ttttaatccatcttgatattgtttctagtcatgtatgtatgattgaagattttgtacatattttaatatcgacagatgatggttcat 18674058  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 18692340 - 18692219
Alignment:
Q  22 aagcatggagcaggatgtgatgttcaccaatccttataggaagcgaaaatcaga-----------acttggaagtttctgagacaaaacttgtgttttcc 110  Q
    ||||||||||||||||||||| |||| |||||||||||| ||| ||||||||||           ||||||||||||| |||||||||||||||||||||    
T  18692340 aagcatggagcaggatgtgatattcatcaatccttatagaaagagaaaatcagatgaagaacagaacttggaagtttcagagacaaaacttgtgttttcc 18692241  T
Q  111 atatttggtagaaaagctattt 132  Q
    ||||||||||||||||||||||    
T  18692240 atatttggtagaaaagctattt 18692219  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 18692099 - 18692049
Alignment:
Q  181 gtcatgtatgtatgattgaagattttgtacatattttcatatcgacagatg 231  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  18692099 gtcatgtatgtatgattaaagagtttgtacatattttcataccgacagatg 18692049  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 18683026 - 18682911
Alignment:
Q  22 aagcatggagcaggatgtgatgttcaccaatccttataggaagcgaaaatcaga-----------acttggaagtttctgagacaaaacttgtgttttcc 110  Q
    |||||| |||||||||||||| |||| |||||||||||| ||| ||||||||||           ||||||||||||| |||||| |||||||||||| |    
T  18683026 aagcatagagcaggatgtgatattcatcaatccttatagaaagagaaaatcagatgaagatcagaacttggaagtttccgagacagaacttgtgtttttc 18682927  T
Q  111 atatttggtagaaaag 126  Q
    | |||||| |||||||    
T  18682926 acatttggcagaaaag 18682911  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 18650603 - 18650551
Alignment:
Q  23 agcatggagcaggatgtgatgttcaccaatccttataggaagcgaaaatcaga 75  Q
    ||||| |||||||||||||| ||||||||||||||||| ||  ||||||||||    
T  18650603 agcatagagcaggatgtgatattcaccaatccttatagaaacagaaaatcaga 18650551  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 18650545 - 18650483
Alignment:
Q  70 atcagaacttggaagtttctgagacaaaacttgtgttttccatatttggtagaaaagctattt 132  Q
    |||||| |||| |||||||||||||| || || ||||||||| || ||| |||||||||||||    
T  18650545 atcagagcttgtaagtttctgagacagaagttctgttttccacatctggcagaaaagctattt 18650483  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 18650328 - 18650300
Alignment:
Q  206 tgtacatattttcatatcgacagatgatg 234  Q
    |||||||||||||||||||||||||||||    
T  18650328 tgtacatattttcatatcgacagatgatg 18650300  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 18718822 - 18718770
Alignment:
Q  23 agcatggagcaggatgtgatgttcaccaatccttataggaagcgaaaatcaga 75  Q
    ||||| |||||||||||||| ||| ||||||||||||| ||  ||||||||||    
T  18718822 agcatagagcaggatgtgatattctccaatccttatagaaacagaaaatcaga 18718770  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 26827304 - 26827341
Alignment:
Q  23 agcatggagcaggatgtgatgttcaccaatccttatag 60  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  26827304 agcatggaggaggatgtgatattcaccaatccttatag 26827341  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 27652079 - 27652047
Alignment:
Q  70 atcagaacttggaagtttctgagacaaaacttg 102  Q
    |||||||||||||||||||||||||| ||||||    
T  27652079 atcagaacttggaagtttctgagacagaacttg 27652047  T

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