View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_4 (Length: 543)
Name: NF7947_low_4
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 527
Target Start/End: Complemental strand, 25322888 - 25322365
Alignment:
| Q |
11 |
ttattctcatgtatgaacagacggaaaaggaccggtaaatccaaaaggattacagtactacaacaatcttatagatgaattgataagccatggttctttc |
110 |
Q |
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| T |
25322888 |
ttattctcatgtatgaacagacggaaaaggatcggtaaatccaaaaggattacagtactacaacaatcttatagatgaattgataagccatggttctttc |
25322789 |
T |
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| Q |
111 |
gaatactacattttccttttcggtcactttgacta---acatcttagagaggttgatccaatgtcgatgcatatttacttttgttgttgtttctacatct |
207 |
Q |
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| T |
25322788 |
gaatactacattttccttttcggtcactttgactactaacatcttagagaggttgatccaatgtcgatgcatatttacttttgttgttgtttctacatct |
25322689 |
T |
|
| Q |
208 |
tgtaggaatccaaccacatgttacattacatcattgggatctaccacaaaaacttgaggatgaatatggaggatgggttaatcgaagcattgtgtacgct |
307 |
Q |
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| T |
25322688 |
tgtaggaatccaaccacatgttacattacatcattgggatctaccacaaaaacttgaggatgaatatggaggatgggttaatcgaagcattgtgtacgct |
25322589 |
T |
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| Q |
308 |
tcccaaactttcaagtctctatttgtgttaccattttattttagattgaggatgatgccaaatacacctggctcaaacataagaaatatttcatatgagt |
407 |
Q |
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| T |
25322588 |
tcccaaa-tttcaagtctctatttgtgttaccattttgttttagattga-gatgatgccaaatacacctggctaaaacataagaaatatttcatatgagt |
25322491 |
T |
|
| Q |
408 |
ttaaatatacgc------nnnnnnnnnnnttacttgtatctgatctacattcgatcagatacatttcttttcnnnnnnngctttatttaagtttggaacg |
501 |
Q |
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| T |
25322490 |
ttaaatatacgcaaaaaaaaaaaaaaaaattacttgtatctgatctacattcgatcagatacatttcttttctttttttgctttatttaagtttggaacg |
25322391 |
T |
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| Q |
502 |
taatctttattgtgattaatgtaagt |
527 |
Q |
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| T |
25322390 |
taatctttattgtgattaatgtaagt |
25322365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 25328444 - 25328367
Alignment:
| Q |
210 |
taggaatccaaccacatgttacattacatcattgggatctaccacaaaaacttgaggatgaatatggaggatgggtta |
287 |
Q |
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| T |
25328444 |
taggaatcgaagcacatgttacattgcaccactgggatctaccacagtcacttgaggatgagtatgaaggatgggtta |
25328367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 5219866 - 5219757
Alignment:
| Q |
207 |
ttgtaggaatccaaccacatgttacattacatcattgggatctaccacaaaaacttgaggatgaatatggaggatgggttaatcgaagcattgtgtacgc |
306 |
Q |
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||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||| || |||| | |
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| T |
5219866 |
ttgtaggaatccaaccacatgttactttaaatcactgggatctaccacaagcacttgaagatgaatatggaggatgggttagtcgaagagttatgtatgg |
5219767 |
T |
|
| Q |
307 |
ttcccaaact |
316 |
Q |
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| T |
5219766 |
ttcccaaact |
5219757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 39641912 - 39641988
Alignment:
| Q |
207 |
ttgtaggaatccaaccacatgttacattacatcattgggatctaccacaaaaacttgaggatgaatatggaggatgg |
283 |
Q |
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|||||||||||||||||||||| ||| |||| | | ||||| ||||| ||||||||||||||||| ||||||| |
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| T |
39641912 |
ttgtaggaatccaaccacatgtcacactacacaactatgatctcccacaggcacttgaggatgaatatgaaggatgg |
39641988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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