View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_44 (Length: 221)
Name: NF7947_low_44
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 28754288 - 28754428
Alignment:
| Q |
65 |
gttaactatccatatacggtaagtcacttattgatcatttttcgaatttgtgacaccttccttaattattttcccatacgaaagagcaaatctctttata |
164 |
Q |
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| T |
28754288 |
gttaactatccatatacggtaagtcacttattgatcatttttcga-tttgtgacaccttccttaattattttcccgtacgaaagagcaaatctctttata |
28754386 |
T |
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| Q |
165 |
ccaaaaactttcgttttttctatccatgacaccttcctcgat |
206 |
Q |
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| T |
28754387 |
ccaaaaactttcgttttttctatccatgacaccttcctcgat |
28754428 |
T |
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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 28754413 - 28754469
Alignment:
| Q |
115 |
tgacaccttccttaattattttcccatacgaaagagcaaatctctttataccaaaaa |
171 |
Q |
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| T |
28754413 |
tgacaccttcctcgattttttttccgtacgaaagagcaattctctttataccaaaaa |
28754469 |
T |
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