View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_5 (Length: 534)
Name: NF7947_low_5
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 8176436 - 8175925
Alignment:
| Q |
1 |
ctttggttcctagttttccttgtttcgccaatatttacgtgtctctcatggaaaaggtatagatgatgtctatttcttaataaccaccattgtgatgaac |
100 |
Q |
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| T |
8176436 |
ctttggttcctagttttccttgtttcgccaatatttacgtgtctctcatggaaaaggtatagatgatgtctatttcttaataaccaccattgtgatgaac |
8176337 |
T |
|
| Q |
101 |
aaatgatatattatcatcacatctcattttgattctttgattgcagccacatgttgattttggattaaaactacttggagctgatgcaatgtctattcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8176336 |
aaatgatatattatcatcacatctcattttgattctttgattgcagccacatgttgattttggattaaaactacttggagctgatgcaatgtctattcct |
8176237 |
T |
|
| Q |
201 |
ggtctttacaggattgtccaggtagcatatactatagcacttccatgtcattaatattatgcttgcaaaactacaaaaaagattgtgatatagtaactga |
300 |
Q |
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| T |
8176236 |
ggtctttacaggattgtccaggtagcatatactatagcacttccatgtcattaatattatgcttgcaaaactacaaaaaagattgtgatatagtaactga |
8176137 |
T |
|
| Q |
301 |
tttagtgacaaatcggtttatagaccaaaattgacaaattggtcataatattagcaactagttatttagcgatatttttcaaatcggacacaaactcaaa |
400 |
Q |
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| T |
8176136 |
tttagtg----atcggtttatagaccaaaattgacaaatcggtcataatattagcaactagttatttagcgatatttttcaaatcggacacaaactcaaa |
8176041 |
T |
|
| Q |
401 |
tagtagttgatatagaaacttattcggaaaataaatcagtctcttagagacacaaaaatatttcactcactaaattgatcacaaaatactaaaattttgt |
500 |
Q |
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| T |
8176040 |
tagtagttgatatagaaactgattcggaaaataaatcagtctct---agagacaaaaatatttcactcactaaattgatcacaaaatactaaaattttgt |
8175944 |
T |
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| Q |
501 |
gtaaagttttagcattgat |
519 |
Q |
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||||||||||||||||||| |
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| T |
8175943 |
gtaaagttttagcattgat |
8175925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 18845291 - 18845236
Alignment:
| Q |
2 |
tttggttcctagttttccttgtttcgccaatatttacgtgtctctcatggaaaagg |
57 |
Q |
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||||||||||||||||||||||||||||| |||||| || |||||||||||||||| |
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| T |
18845291 |
tttggttcctagttttccttgtttcgccattatttatgtttctctcatggaaaagg |
18845236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 18845215 - 18845161
Alignment:
| Q |
116 |
atcacatctcattttgattctttgattgcagccacatgttgattttggattaaaa |
170 |
Q |
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||||||| || |||| |||||||| || || |||||||||||||||||||||||| |
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| T |
18845215 |
atcacatatcttttttattctttgtttacaaccacatgttgattttggattaaaa |
18845161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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