View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_6 (Length: 518)
Name: NF7947_low_6
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 8584349 - 8583837
Alignment:
| Q |
18 |
tatactatgtatatactgtaatatactttgccactcaaatattctatagctgaggaattttttcttctgttt---------tggcaaattataaagaaga |
108 |
Q |
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| T |
8584349 |
tatactatgtatatagtgtaatatactttgccactcaaatattctatagctgaggaattttttcttctgtttattttgttttggctaattatacagaaga |
8584250 |
T |
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| Q |
109 |
actcataagtgagttgttcctttgctcgtgttgtggaaagtttctgcacgggctaaggcaccttaggttagaaaatttctatctgtaccccc-attattt |
207 |
Q |
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| T |
8584249 |
actcataagtgagttgttcctttgctcgtgttgtggaaagtttctgcacgggctaaggcaccttaggttagagaatttctatctgtaccccccattattt |
8584150 |
T |
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| Q |
208 |
gcttatacatctctttcccacttttaatttcccccaaaaatacccgttacaagaaataaatctttggaacgttgtttttgcgacataaaaggataccaga |
307 |
Q |
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| T |
8584149 |
gcttatacatctctttcccatttttaatttcccccaaaaatacccgttacaagaaataaatctttggaatgttgtttttgcaacataaaaggataccaga |
8584050 |
T |
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| Q |
308 |
aattaatttctgaaattctaaacttctgtttttagaaatttaatcccataacaaaatagaatcaaagattcagacaatattgttgtgaagatcaaaccga |
407 |
Q |
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| T |
8584049 |
aattaatttctgaaattctaaacttctgtttttagaaatttaatcccataacaaaatagaatcaaagattcggacaatattgttgtgaatatcaaaccga |
8583950 |
T |
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| Q |
408 |
act--gagatggtcgccagcctagcaatcggttcaaccatggtaaattcagaggcacatagtaacagtcgaattgggttgaattgcatatttgaaccatg |
505 |
Q |
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| T |
8583949 |
actgagagatagtcgtcagcctagcaatcggttcaaccatggtaaattcagaggcacataggaacagtcggattgggttgaattgcatatttgaaccatg |
8583850 |
T |
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| Q |
506 |
acccaaaagtccc |
518 |
Q |
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| T |
8583849 |
acccaaaagtccc |
8583837 |
T |
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