View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7947_low_8 (Length: 517)
Name: NF7947_low_8
Description: NF7947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7947_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 56 - 500
Target Start/End: Complemental strand, 42465258 - 42464809
Alignment:
| Q |
56 |
aagttattgtctagaaacagtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaag |
155 |
Q |
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| T |
42465258 |
aagttattgtctagaaacagtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaag |
42465159 |
T |
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| Q |
156 |
aaaatggtgttactgtacaaaatataaagtcgtgccaacatgtttaatcatatgatatatcc----agaggattatcaattctttcacagctgcacgttg |
251 |
Q |
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| T |
42465158 |
aaaatggtgttactgtacaaaatataaagtcgtgccaacatgtttaatcatatgatatatcctctcagaggattaacaattctttcacagctgcacgttg |
42465059 |
T |
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| Q |
252 |
ttaattatataattaaacattttcactagctgaatttagatattcaaaaagtacatagaagtccatgaaattgaacttaaatacctcaaagtggttttta |
351 |
Q |
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| T |
42465058 |
ttaattatataattaaacattttcactagctgaatttagatattcaaaaagtacatagaagtccatgaaattgaacttaaatacctcaaagtggttttta |
42464959 |
T |
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| Q |
352 |
gctagtctagattctaggcatttatatttttcgaaggtccaaacttatattcaagaatcaagatgttgatctagtgttcattttaattttccatgcattg |
451 |
Q |
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| T |
42464958 |
gctagtctagagtctaggcatttatatttttcgaaggtccaaacttatattcaagaatcaagatgttgatctagtgttcattttaattttccatgcattg |
42464859 |
T |
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| Q |
452 |
tata-tttaagcagaggccataagcaactaacctatgaaaaggttataat |
500 |
Q |
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| T |
42464858 |
tatactttaagcagaggccataagcaactaacctatgaaaaggttataat |
42464809 |
T |
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