View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7948_high_11 (Length: 264)
Name: NF7948_high_11
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 19856170 - 19856418
Alignment:
| Q |
10 |
attatactcacatcctcattcataaacctctccggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatag |
109 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856170 |
attatactcacatcctcattcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatag |
19856269 |
T |
|
| Q |
110 |
cagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856270 |
cagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgc |
19856369 |
T |
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| Q |
210 |
ttccttcacaatgcattgcaagtaacacattttttgaacatcagcatca |
258 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
19856370 |
ttccttcacaatgcactgtaagtaacacattttttgaacatcagcatca |
19856418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 8748468 - 8748312
Alignment:
| Q |
10 |
attatactcacatcctcattcataaacctctccggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccat |
107 |
Q |
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||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||| |
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| T |
8748468 |
attatactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccat |
8748369 |
T |
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| Q |
108 |
agcagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaa |
164 |
Q |
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|||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
8748368 |
agcagttgtacctttcggaacatgcttctcacctaccataacatcatgaacagctaa |
8748312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 39427880 - 39428039
Alignment:
| Q |
10 |
attatactcacatcctcattcataaacctctccggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccat |
107 |
Q |
| |
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||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||| || |||||||||||||||||||| ||||| ||||||||||| |
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| T |
39427880 |
attatactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttatagcccatatattcaccat |
39427979 |
T |
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| Q |
108 |
agcagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaacg |
167 |
Q |
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|||||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||| |
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| T |
39427980 |
agcagttgtacctttcggaacatgcttctcacctaccataacatcatgaacaactaaacg |
39428039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 35081057 - 35080901
Alignment:
| Q |
10 |
attatactcacatcctcattcataaacctctccggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccat |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||| |
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| T |
35081057 |
attatactcacttcctcattcataaacctctctcgcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccat |
35080958 |
T |
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| Q |
108 |
agcagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaa |
164 |
Q |
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|||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
35080957 |
agcagttgtacctttcggaacatgcttctcacctaccataacatcatgaacagctaa |
35080901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 32830370 - 32830523
Alignment:
| Q |
14 |
tactcacatcctcattcataaacctctccggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagca |
111 |
Q |
| |
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||||||| |||||||||||||||||||| ||||| |||||||| || ||||| | |||||||||||||||||||| |||||||||||||||||| || |
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| T |
32830370 |
tactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgtaaaccttctcatcatgtgttatagcccacatattcaccatacca |
32830469 |
T |
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| Q |
112 |
gttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaa |
165 |
Q |
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|||||||||||||||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
32830470 |
gttgtacctttcggaacatgcttctcacctaccataacatcatgaacagctaaa |
32830523 |
T |
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