View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7948_high_14 (Length: 228)
Name: NF7948_high_14
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_high_14 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 29585350 - 29585545
Alignment:
| Q |
36 |
attggggaaagacatcaagatacgcttccacgactttgtgtaagttgtgcatgctgaaatcttggccaaatgtgattcgggtaatgttaaggtactcaag |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585350 |
attggggaaagacatcaagatacgcttccacgactttgtgtaagttgtacatgctgaaatcctggccaaatgtgattcgggtaatgttaaggtactcaag |
29585449 |
T |
|
| Q |
136 |
atcaggcgcatttatttcaaggtaaaccccaact---tcatcctcattggcaatttccaaccttcttaaggaaggtgggacacaaactttgtccaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585450 |
atcaggcgcatttatttcaaggtaaaccccaacttcatcatcctcattggcaatttccaaccttcttaaggaaggtgggacacaaactttgtccaa |
29585545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 17478080 - 17477920
Alignment:
| Q |
8 |
ttgtgtaaagggatgacagaaccaaacgattggggaaagacatcaagatacgcttccacgactttgtgtaagttgtgcatgctgaaatcttggccaaatg |
107 |
Q |
| |
|
|||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||| | |||| ||||| ||||||| |||| |
|
|
| T |
17478080 |
ttgtgtaaagcgacgacggaaccaagcgattggggaaagacatcaagatacgcttccaccacattgtgcaagttatacatggtgaaaacttggccgaatg |
17477981 |
T |
|
| Q |
108 |
tgattcgggtaatgttaaggtactcaagatcaggcgcatttatttcaaggtaaaccccaac |
168 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
17477980 |
tgattccggtaatgttaaggtactcaagattcggtgcatttatttcaaggtaagccccaac |
17477920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 4427604 - 4427826
Alignment:
| Q |
5 |
aggttgtgtaaagggatgacagaaccaaacgattggggaaagacatcaagatacgcttccacgactttgtgtaagttgtgcatgctgaaatcttggccaa |
104 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| ||| |||| |||| ||||| |||||||| || ||||| ||||||| |||||| ||| ||| ||| |
|
|
| T |
4427604 |
aggttgttcaaagggatgacggaagaaaacggctggagaaaaacattaagatgtgcttccaccacattgtgcaagttgtacatgctaaaaacttcgccgg |
4427703 |
T |
|
| Q |
105 |
atgtgattcgggtaatgttaaggtactcaagatcaggcgcatttatttcaaggtaaaccccaacttcatcctcattggcaatttccaaccttcttaagga |
204 |
Q |
| |
|
||||||||| | | |||| ||||||||||||||| || || || |||||||||||| |||||||||||| ||| || ||| ||||||| | || || |
|
|
| T |
4427704 |
atgtgattccgttgatgtaaaggtactcaagatccggtgctttcatttcaaggtaagccccaacttcattatcaatgatgattgtcaaccttttcaaaga |
4427803 |
T |
|
| Q |
205 |
aggtgggacacaaactttgtcca |
227 |
Q |
| |
|
||||||||| |||||||| |||| |
|
|
| T |
4427804 |
aggtgggacgcaaactttatcca |
4427826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 4441680 - 4441642
Alignment:
| Q |
118 |
aatgttaaggtactcaagatcaggcgcatttatttcaag |
156 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
4441680 |
aatgttaaggtactcaagatctggtgcatttatttcaag |
4441642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 8341103 - 8340915
Alignment:
| Q |
40 |
gggaaagacatcaagatacgcttccacgactttgtgtaagttgtgcatgctgaaatcttggccaaatgtgattcgggtaatgttaaggtactcaagatca |
139 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| | ||| ||| || ||||||| ||| ||| ||||||||| |||||||||||||||| | |||||| |
|
|
| T |
8341103 |
gggaaagacatcaagatacgcttccaccacgttgggcaagctgtacaagctgaaaccttcgccgaatgtgatttgggtaatgttaaggtattgaagatcc |
8341004 |
T |
|
| Q |
140 |
ggcgcatttatttcaaggtaaaccccaacttcatcctcattggcaatttccaaccttcttaaggaaggtgggacacaaactttgtccaa |
228 |
Q |
| |
|
|||||||||| ||| | |||| | ||||| |||| |||| ||| |||| ||||||| | |||||||| |||||||||||||| ||||| |
|
|
| T |
8341003 |
ggcgcatttacttccaagtaagctccaacatcattctcaatggtgattttcaaccttttcaaggaaggcgggacacaaactttatccaa |
8340915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University