View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7948_high_4 (Length: 335)
Name: NF7948_high_4
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 117 - 318
Target Start/End: Complemental strand, 12944784 - 12944583
Alignment:
| Q |
117 |
aatcaatgaattttttctctttgtggtttaggatttgaaaatccgagttccgcatgttgtcatcaagcaggtcgatatggaggattggtcacttgtacgg |
216 |
Q |
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| T |
12944784 |
aatcaatgaattttttctctttgtggtttaggatttgaaaatccgagttccgcatgttgtcatcaagcaggtcgatatggaggattggtcacttgtacgg |
12944685 |
T |
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| Q |
217 |
gtgtttcaaaagtttgtgaagatcgatccaagtacattttttgggatactttccatcccagtgatgctgccaatgttgtcattgcaaagcgtatgttaca |
316 |
Q |
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| T |
12944684 |
gtgtttcaaaagtttgtgaagatcgatcgaagtacattttttgggatactttccatcccagtgatgctgccaatgttttcattgcaaagcgtatgttaca |
12944585 |
T |
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| Q |
317 |
cg |
318 |
Q |
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|| |
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| T |
12944584 |
cg |
12944583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 12944941 - 12944837
Alignment:
| Q |
13 |
attctttatgcagatgcttaccacattactcaagatatgatcaagaattatcaaaaatatggtaacattaatcattttcgtttaccacgtttcttttgtt |
112 |
Q |
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| T |
12944941 |
attctttatgcagatgcttacgacattactcaagatatgatcaagaattataaaaaatatggtaacattcatcattttcgtttaccacgtttcttttgtt |
12944842 |
T |
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| Q |
113 |
tgaaa |
117 |
Q |
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| T |
12944841 |
tgaaa |
12944837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 12938991 - 12938908
Alignment:
| Q |
221 |
ttcaaaagtttgtgaagatcgatccaagtacattttttgggatactttccatcccagtgatgctgccaatgttgtcattgcaaa |
304 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
12938991 |
ttcaaaagtttgtgaagatcgatctaagtacattttttgggatactttccatcccagtgatgctgccaatgttattattgcaaa |
12938908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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