View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7948_high_9 (Length: 291)
Name: NF7948_high_9
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 21215200 - 21215464
Alignment:
| Q |
8 |
cttcacctatgtattgatatgaattttagacttgaaatttaggttttattttcttgtaaattcttggtcttaaatatatgttatgccccaaaagataatc |
107 |
Q |
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| T |
21215200 |
cttcacctatgtattgatatgaatttcaggcttgaaatgtagattttattttcttgtaaattcttggtcttaaatatatgttatgccctaaaagataatc |
21215299 |
T |
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| Q |
108 |
atttgaagattgtaaattcatatgcaaacataggtgaaagaccgaagatacaaagcaacgaacttgagattgagacaacgatgcaacatacttgtaatgt |
207 |
Q |
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| T |
21215300 |
atttgaagattgtaaattcatatgcaaacatagatgaaagaccgaagatacaaagcaacggacttgagattgagacaacgatgcaacatacttgtaatgt |
21215399 |
T |
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| Q |
208 |
ataaatgcaaatgtgtttatatttaagacattctatacaatcaaagatatagaatgtcaaactaa |
272 |
Q |
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| T |
21215400 |
ataaatgcaaatgtgtctatatttaagacattctatacaatcaaagatatagaatgtcaaactaa |
21215464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 16065697 - 16065529
Alignment:
| Q |
9 |
ttcacctatgtattgatatgaattttagacttgaaatttaggttttattttcttgtaaattcttggtcttaaatatatgttatgccccaaaagataatca |
108 |
Q |
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| T |
16065697 |
ttcacctatgttttgatatgaatttcaggcttgaaatctaggtttttttat-ttgtcagctcttgatctgaaatatattatatgccaaaaaa---aatca |
16065602 |
T |
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| Q |
109 |
tttgaagattgtaaattcatatgcaaacataggtgaaagaccgaagatacaaagcaacgaacttgagattgaga |
182 |
Q |
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| T |
16065601 |
tttgaaaattgaaatttcatatgcaaacat-gacgaaagatcaaaggtacaatgaaacgaacttgagattgaga |
16065529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 3175276 - 3175345
Alignment:
| Q |
112 |
gaagattgtaaattcatatgcaaacataggtgaaagaccgaagatacaaagcaacgaacttgagattgaga |
182 |
Q |
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| T |
3175276 |
gaagattg-aaatccatatgcaaacatagatgaaatatcaaagatacaatgcaacgaacttgagattgaga |
3175345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 24596550 - 24596476
Alignment:
| Q |
68 |
ttcttggtcttaaatatatgttatgccccaaaagataatc----atttgaagattgtaaattcatatgcaaacat |
138 |
Q |
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| T |
24596550 |
ttcttagtcttaaatatatattataccccaaaagaaaaccatatatttgaagcttggaaattcatatgcaaacat |
24596476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 24617564 - 24617638
Alignment:
| Q |
68 |
ttcttggtcttaaatatatgttatgccccaaaagataatc----atttgaagattgtaaattcatatgcaaacat |
138 |
Q |
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| T |
24617564 |
ttcttagtcttaaatatatattataccccaaaagaaaaccatatatttgaagcttggaaattcatatgcaaacat |
24617638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 7371137 - 7371165
Alignment:
| Q |
74 |
gtcttaaatatatgttatgccccaaaaga |
102 |
Q |
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| T |
7371137 |
gtcttaaatatatgttatgccccaaaaga |
7371165 |
T |
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