View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7948_low_1 (Length: 406)
Name: NF7948_low_1
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 26017044 - 26017439
Alignment:
| Q |
1 |
gaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgttactctgcttctcttgatcttcatggacaatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017044 |
gaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgttactctgcttctcttgatcttcatggacaatcta |
26017143 |
T |
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| Q |
101 |
aacaggtaacttcatgggttgcatggatttgttcatcnnnnnnnnnnnnnn---atactatatagatttattaaacaaatttggaaaggtcttattgaat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26017144 |
aacaggtaacttcatgggttgcatggatttgttcatctttttttttttttttttatactatatagatttattaaacaaatttggaaaggtcttattaaat |
26017243 |
T |
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| Q |
198 |
ttatggttaatgggatttacaaaatggatgcatgtgcaaggaccaatatatagtctaagatttttgtttgtgattggtacaggcnnnnnnnggcatattt |
297 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26017244 |
ttatggttaatgggatttacaaaatggatacatgtgtaaggaccaatatatagtctaagatttttgtttgtgattggtacaggcattttttggcatattt |
26017343 |
T |
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| Q |
298 |
gatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtgatatt |
393 |
Q |
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| T |
26017344 |
gatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtgatatt |
26017439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 289 - 393
Target Start/End: Original strand, 26002523 - 26002627
Alignment:
| Q |
289 |
ggcatatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtg |
388 |
Q |
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| T |
26002523 |
ggcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaatgtgttagaagaagtaatcagaagagatgagagtg |
26002622 |
T |
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| Q |
389 |
atatt |
393 |
Q |
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||||| |
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| T |
26002623 |
atatt |
26002627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 26002001 - 26002114
Alignment:
| Q |
1 |
gaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgttactctgcttctcttgatcttcatggacaatcta |
100 |
Q |
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||||| || |||||||| ||||||||||||||||||| |||| | || || ||||||||||||||||| ||||||||| ||||||||||||| |||| | |
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| T |
26002001 |
gaggtggagggagatggattttctgtgtattgtaagaaaggaggtagaaaacatatggaggatcgttattctgcttctgttgatcttcatggtgaatcaa |
26002100 |
T |
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| Q |
101 |
aacaggtaacttca |
114 |
Q |
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|||||||||||||| |
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| T |
26002101 |
aacaggtaacttca |
26002114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 30373249 - 30373307
Alignment:
| Q |
10 |
ggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgtta |
68 |
Q |
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|||||||||| |||||| |||||||||||||| || ||| || ||||||| |||||||| |
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| T |
30373249 |
ggagatgggtattctgtttattgtaagagagggaggagggagtatatggaagatcgtta |
30373307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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