View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7948_low_10 (Length: 277)

Name: NF7948_low_10
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7948_low_10
NF7948_low_10
[»] chr2 (4 HSPs)
chr2 (1-260)||(3220201-3220458)
chr2 (5-169)||(12504720-12504884)
chr2 (5-169)||(14681042-14681206)
chr2 (173-255)||(15985303-15985381)
[»] scaffold0014 (2 HSPs)
scaffold0014 (5-169)||(143719-143883)
scaffold0014 (5-169)||(173513-173677)
[»] chr8 (4 HSPs)
chr8 (5-169)||(44197897-44198061)
chr8 (5-164)||(20793444-20793603)
chr8 (5-169)||(23929090-23929254)
chr8 (172-249)||(23729333-23729406)
[»] chr7 (4 HSPs)
chr7 (5-169)||(48513557-48513721)
chr7 (5-169)||(48727999-48728163)
chr7 (1-169)||(3718347-3718514)
chr7 (6-136)||(42105178-42105308)
[»] chr6 (1 HSPs)
chr6 (5-169)||(29651774-29651938)
[»] chr5 (4 HSPs)
chr5 (5-169)||(36662526-36662690)
chr5 (5-169)||(36679088-36679252)
chr5 (5-169)||(23203936-23204100)
chr5 (5-118)||(43560199-43560311)
[»] chr3 (3 HSPs)
chr3 (5-169)||(38327816-38327980)
chr3 (5-169)||(55488644-55488808)
chr3 (5-169)||(46073352-46073514)
[»] chr1 (3 HSPs)
chr1 (5-169)||(52609135-52609299)
chr1 (5-164)||(29886958-29887116)
chr1 (16-164)||(52887707-52887855)
[»] scaffold1284 (1 HSPs)
scaffold1284 (5-118)||(143-255)
[»] scaffold0318 (1 HSPs)
scaffold0318 (31-169)||(19955-20093)
[»] chr4 (1 HSPs)
chr4 (30-124)||(56288686-56288780)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 3220458 - 3220201
Alignment:
Q  1 tcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3220458 tcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgtttttgtttcgcgaagaacaccttc 3220359  T
Q  101 gacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagcttttaacaaatcacttgtcaatactgtgactgact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  3220358 gacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgttt--agcttttaacaaatcacttgtcaatactgtgactgact 3220261  T
Q  201 gagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgaccttgatta 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220260 gagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgaccttgatta 3220201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 12504884 - 12504720
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  12504884 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 12504785  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  12504784 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 12504720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 14681042 - 14681206
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  14681042 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 14681141  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  14681142 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 14681206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 15985303 - 15985381
Alignment:
Q  173 aaatcacttgtcaatactgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgacctt 255  Q
    ||||||||||||||||||||| ||||    ||||||||| ||| ||||||||||| ||||||||||||||||||||| |||||    
T  15985303 aaatcacttgtcaatactgtggctga----gctggcaatcgtcacacttaggacaagacttgcttatttgagggatcaacctt 15985381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 143883 - 143719
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| ||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  143883 cgttccagcttcgcacgctgcatctgtgagataaaccgatggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 143784  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  143783 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 143719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 173677 - 173513
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  173677 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 173578  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  173577 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 173513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 44198061 - 44197897
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  44198061 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 44197962  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  44197961 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 44197897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 20793603 - 20793444
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  20793603 cgttccagcttcgcgcgctgcatctgtgagataaacctgtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 20793504  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaag 164  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||| ||||||||    
T  20793503 tgttgcttccattgaaggtagtttgtatcatcaagcttaacagaaactacttgtttgaag 20793444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 23929090 - 23929254
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||||||| | ||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||| |||    
T  23929090 cgttccagcttcgcgcgctgcatctgtgagataaatcagtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcaact 23929189  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  23929190 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 23929254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 23729406 - 23729333
Alignment:
Q  172 caaatcacttgtcaatactgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatc 249  Q
    ||||||||||||||||||||||   | | ||||||||||||||| |||||||||||| ||||||||||||||| ||||    
T  23729406 caaatcacttgtcaatactgtg---gtc-gagctggcaatagtcacacttaggacagaacttgcttatttgagagatc 23729333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 48513557 - 48513721
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  48513557 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 48513656  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  48513657 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 48513721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 48727999 - 48728163
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  48727999 cgttccagctttgcgcgctgcatgtgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 48728098  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  48728099 tgttgtttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 48728163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 3718347 - 3718514
Alignment:
Q  1 tcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttc 100  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||| |||||||||||    
T  3718347 tcttcgttccagcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcg-agaacaccttc 3718445  T
Q  101 gacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    ||||||||||||||||| |||||||||  ||||||||||||| ||| |||||| | |||||||| ||||    
T  3718446 gacttgttgcttccattaaaggtagtttgtatcatcaagcttgacagaaactagttgtttgaaggtttt 3718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 42105308 - 42105178
Alignment:
Q  6 gttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgactt 105  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| | |||||||||||||| ||||    
T  42105308 gttccagcttcgcgcgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccacgaagaacaccttcaactt 42105209  T
Q  106 gttgcttccattgaaggtagttcatatcatc 136  Q
    ||||||||||||||||||||||| |||||||    
T  42105208 gttgcttccattgaaggtagttcgtatcatc 42105178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 29651938 - 29651774
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  29651938 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 29651839  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  29651838 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 29651774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 36662690 - 36662526
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  36662690 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 36662591  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  36662590 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 36662526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 36679088 - 36679252
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  36679088 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 36679187  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  36679188 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 36679252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 23203936 - 23204100
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||||||| | || ||| ||| | ||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  23203936 cgttcctgctccacgtgctgcatttatgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 23204035  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||| |||| |||||||| ||||    
T  23204036 tgttgcttccattgaaggtagttcgtataatcaagcttaacagaaagtacttgtttgaaggtttt 23204100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 43560311 - 43560199
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||||||||| |    
T  43560311 cgttcctgcttcgtgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttccgcgaagaacaccttcga-t 43560213  T
Q  105 tgttgcttccattg 118  Q
    ||||||||||||||    
T  43560212 tgttgcttccattg 43560199  T

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Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 38327816 - 38327980
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  38327816 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 38327915  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  38327916 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 38327980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 55488808 - 55488644
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  55488808 cgttccagcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 55488709  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||| ||||    
T  55488708 tgttgcttccattgaaggtagttcgtatcatcaagcttaatagaaactacttgtttgaaggtttt 55488644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 46073514 - 46073352
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| |||||||||||||||||  |||||||| |||||||||||||||||||| | | |||||| ||||||||||||||||||||    
T  46073514 cgttccagcttcgcgcgctgcatctgtgagataaacc--tggaatctcaggtgaaatcacaaatttcaacatcttcgttccgcgaagaacaccttcgact 46073417  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  46073416 tgttgtttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 46073352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 52609135 - 52609299
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  52609135 cgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 52609234  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  52609235 tgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 52609299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 29887116 - 29886958
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||| | |||||| ||||||||||||||||||||    
T  29887116 cgttcctgcttcgcgcgctgcat-tgtgagataaaccggtggaatctcaggcgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgact 29887018  T
Q  105 tgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaag 164  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  29887017 tgttgtttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaag 29886958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 52887855 - 52887707
Alignment:
Q  16 cgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttcca 115  Q
    |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||    
T  52887855 cgcgcgctgcaactgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcattccgcgaagaacaccttcgacttgttgcttcca 52887756  T
Q  116 ttgaaggtagttcatatcatcaagcttaacataaactactcgtttgaag 164  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  52887755 ttgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaag 52887707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 255 - 143
Alignment:
Q  5 cgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgact 104  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||||||||| |    
T  255 cgttcctgcttcgtgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttccgcgaagaacaccttcga-t 157  T
Q  105 tgttgcttccattg 118  Q
    ||||||||||||||    
T  156 tgttgcttccattg 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 169
Target Start/End: Original strand, 19955 - 20093
Alignment:
Q  31 tgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcat 130  Q
    ||||||||||||||||||| || || |||| || |||||||||| ||||  || | || |  |||||||| ||||| ||||||||||  ||||||||       
T  19955 tgagataaaccggtggaatttgtggagaaaccataaatttcaccatttttcttcctcgcaacacaccttctacttgctgcttccattagaggtagtttga 20054  T
Q  131 atcatcaagcttaacataaactactcgtttgaagctttt 169  Q
    ||||| |||||| ||| |||||||  |||||||| ||||    
T  20055 atcatgaagcttcacaaaaactacctgtttgaaggtttt 20093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 56288686 - 56288780
Alignment:
Q  30 gtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggta 124  Q
    |||||||| |||||||||||||| || ||||  |||  ||||||| | |||||  |||| | ||| |||||||| ||||| ||||||||||||||    
T  56288686 gtgagatacaccggtggaatctgcggcgaaacgacatgtttcaccatcttcgtaccgcgcaaaactccttcgacctgttgtttccattgaaggta 56288780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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