View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7948_low_12 (Length: 242)
Name: NF7948_low_12
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 14379988 - 14379777
Alignment:
| Q |
9 |
gttttcttactcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagca |
108 |
Q |
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| T |
14379988 |
gttttcttactcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagca |
14379889 |
T |
|
| Q |
109 |
agtaatgtcatgtttggttatgtaggttgattttatttctcgcatccgaagtttgttgagttgtaaatttaccaaaactctaattagtagaagttcgtca |
208 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
14379888 |
agtaatgtcatgtttggttatataggttgattttatttctcgcatccgaagtttgttgagttgtaaattgaccaaaactctaattagtagaagttggtca |
14379789 |
T |
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| Q |
209 |
aatagttgctgc |
220 |
Q |
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|||||||||||| |
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| T |
14379788 |
aatagttgctgc |
14379777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 14246254 - 14246463
Alignment:
| Q |
9 |
gttttcttactcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagca |
108 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| || |||||| |||||||||||||||||| |||||||| ||||||||||||| | ||| |||||||||| |
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| T |
14246254 |
gttttcttactcaccttgaatacgacaattacgatgtttgccccatttatgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagca |
14246353 |
T |
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| Q |
109 |
agtaatgtcatgtttggttatgtaggttgattttatttctcgcat-ccgaagtttgttgagttgtaaatttaccaaaactctaattagtagaagttcgtc |
207 |
Q |
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|||||||||||||||||||||| ||||||| ||||| ||| | || | || | |||| |||||||| ||||||||||||||| ||||||| || |
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| T |
14246354 |
cgtaatgtcatgtttggttatgtgagttgattgtatttttcgtgtgccaatgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatc |
14246453 |
T |
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| Q |
208 |
aaatagttgc |
217 |
Q |
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|||||||||| |
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| T |
14246454 |
aaatagttgc |
14246463 |
T |
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