View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7948_low_15 (Length: 211)
Name: NF7948_low_15
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 39162902 - 39162721
Alignment:
| Q |
13 |
taatactaaatattggaatgaactagatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccg |
112 |
Q |
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| T |
39162902 |
taatactaaatattggaatgaactagatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccg |
39162803 |
T |
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| Q |
113 |
gtcgttgataaacaagctcttcatcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctct |
194 |
Q |
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| T |
39162802 |
gtcgttgataaacaagctcttcatcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctct |
39162721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 39206292 - 39206473
Alignment:
| Q |
13 |
taatactaaatattggaatgaactagatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39206292 |
taatactaaatattggaatgaactagatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccg |
39206391 |
T |
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| Q |
113 |
gtcgttgataaacaagctcttcatcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctct |
194 |
Q |
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| T |
39206392 |
gtcgttgataaacaagctcttcatcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctct |
39206473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 39388233 - 39388306
Alignment:
| Q |
121 |
taaacaagctcttcatcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctct |
194 |
Q |
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| T |
39388233 |
taaacaagctcttcattggacaattttatatgaccaatctgccatgttatacaaaactacgtaacattttctct |
39388306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 39197217 - 39197297
Alignment:
| Q |
110 |
ccggtcgttgataaacaagctcttcatcagaaaatattatatgaccaatctgccatgttatacaaaactagatagcatttt |
190 |
Q |
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| T |
39197217 |
ccggttgttgctaaacaagctcttcattggaccattttctatgaccaatcttccatgttatacaaaactatatagcatttt |
39197297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 33561884 - 33561727
Alignment:
| Q |
37 |
agatgttgaatgttggtgctgagtgttacagataatctagggaaagtcatggaacaagctctgaagttggatgccggtcgttgataaacaagctcttcat |
136 |
Q |
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|||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||| |||||||||||||||| |
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| T |
33561884 |
agatgttggatgctggtgttgagttttacagataatctagggaaagtcatggaacaagctctaatgctggatgctggtcgttgctaaacaagctcttcat |
33561785 |
T |
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| Q |
137 |
cagaaaatattatatgaccaatctgccatgttatacaaaactagatagcattttctct |
194 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33561784 |
gggacaattttatatgaccaatctgccatgttatacaaaactagatagcattttctct |
33561727 |
T |
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