View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7948_low_2 (Length: 387)
Name: NF7948_low_2
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 6274487 - 6274807
Alignment:
| Q |
19 |
gagtcaagaattcaacaatcatcctattgtgaaagagaatctccctccaaaagatggactcctcggctttttcaaatctcgatatgcagcgattagtgct |
118 |
Q |
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| T |
6274487 |
gagtcaagaattcaacaatcatcctattgtgaaagagaatctccctccaaaagatggactcctcggctttttcaaatctcgatatgcagcgattagtgct |
6274586 |
T |
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| Q |
119 |
gcttcgaaatagaccgatttcaagagtgatgccacatgctgcagagctgttggattaagagagataaataggttagtctttagactaatcccagaaataa |
218 |
Q |
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| T |
6274587 |
gcttcgaaatagactgatttcaggagtgatgccgcatgctcgagagccgttggattaagagagataaataggttggtctttagactaatcccagaaataa |
6274686 |
T |
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| Q |
219 |
agcaaagttcactcgttttagtttatttgagcagtattttgagtgttattatcacttatgatgagtacaaatttgatatttatatttagtttaagtatcc |
318 |
Q |
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| T |
6274687 |
agaaaatttcactcattttagtttatttgagctgtattttgagttttattgtcactt---atgagtacaaatttgatatttataattagttcaagtctcc |
6274783 |
T |
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| Q |
319 |
tatttaatatgtagtgcaatctta |
342 |
Q |
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||| | ||||| ||||| |||||| |
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| T |
6274784 |
tatatgatatggagtgctatctta |
6274807 |
T |
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